Identifying and avoiding radiation damage in macromolecular crystallography

References

First citationAgirre, J., Atanasova, M., Bagdonas, H., Ballard, C. B., Baslé, A., Beilsten-Edmands, J., Borges, R. J., Brown, D. G., Burgos-Mármol, J. J., Berrisford, J. M., Bond, P. S., Caballero, I., Catapano, L., Chojnowski, G., Cook, A. G., Cowtan, K. D., Croll, T. I., Debreczeni, J. É., Devenish, N. E., Dodson, E. J., Drevon, T. R., Emsley, P., Evans, G., Evans, P. R., Fando, M., Foadi, J., Fuentes-Montero, L., Garman, E. F., Gerstel, M., Gildea, R. J., Hatti, K., Hekkelman, M. L., Heuser, P., Hoh, S. W., Hough, M. A., Jenkins, H. T., Jiménez, E., Joosten, R. P., Keegan, R. M., Keep, N., Krissinel, E. B., Kolenko, P., Kovalevskiy, O., Lamzin, V. S., Lawson, D. M., Lebedev, A. A., Leslie, A. G. W., Lohkamp, B., Long, F., Malý, M., McCoy, A. J., McNicholas, S. J., Medina, A., Millán, C., Murray, J. W., Murshudov, G. N., Nicholls, R. A., Noble, M. E. M., Oeffner, R., Pannu, N. S., Parkhurst, J. M., Pearce, N., Pereira, J., Perrakis, A., Powell, H. R., Read, R. J., Rigden, D. J., Rochira, W., Sammito, M., Sánchez Rodríguez, F., Sheldrick, G. M., Shelley, K. L., Simkovic, F., Simpkin, A. J., Skubak, P., Sobolev, E., Steiner, R. A., Stevenson, K., Tews, I., Thomas, J. M. H., Thorn, A., Valls, J. T., Uski, V., Usón, I., Vagin, A., Velankar, S., Vollmar, M., Walden, H., Waterman, D., Wilson, K. S., Winn, M. D., Winter, G., Wojdyr, M. & Yamashita, K. (2023). Acta Cryst. D79, 449–461.  Web of Science CrossRef IUCr Journals Google Scholar
First citationAtakisi, H., Conger, L., Moreau, D. W. & Thorne, R. E. (2019). IUCrJ, 6, 1040–1053.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationBarends, T. R. M., Stauch, B., Cherezov, V. & Schlichting, I. (2022). Nat. Rev. Methods Primers, 2, 59.  Web of Science CrossRef PubMed Google Scholar
First citationBattye, T. G. G., Kontogiannis, L., Johnson, O., Powell, H. R. & Leslie, A. G. W. (2011). Acta Cryst. D67, 271–281.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBeitlich, T., Kühnel, K., Schulze-Briese, C., Shoeman, R. L. & Schlichting, I. (2007). J. Synchrotron Rad. 14, 11–23.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBerman, H. M., Henrick, K. & Nakamura, H. (2003). Nat. Struct. Mol. Biol. 10, 980.  Web of Science CrossRef Google Scholar
First citationBeusekom, B. van, Joosten, K., Hekkelman, M. L., Joosten, R. P. & Perrakis, A. (2018). IUCrJ, 5, 585–594.  Web of Science CrossRef PubMed IUCr Journals Google Scholar
First citationBhattacharyya, R., Dhar, J., Ghosh Dastidar, S., Chakrabarti, P. & Weiss, M. S. (2020). IUCrJ, 7, 825–834.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationBricogne, G., Blanc, E., Brandl, M., Flensburg, C., Keller, P., Paciorek, W., Roversi, P., Sharff, A., Smart, O. S., Vonrhein, C. & Womack, T. (2023). BUSTER. Global Phasing Ltd, Cambridge, United Kingdom.  Google Scholar
First citationBugris, V., Harmat, V., Ferenc, G., Brockhauser, S., Carmichael, I. & Garman, E. F. (2019). J. Synchrotron Rad. 26, 998–1009.  CrossRef CAS IUCr Journals Google Scholar
First citationBurmeister, W. P. (2000). Acta Cryst. D56, 328–341.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBury, C., Garman, E. F., Ginn, H. M., Ravelli, R. B. G., Carmichael, I., Kneale, G. & McGeehan, J. E. (2015). J. Synchrotron Rad. 22, 213–224.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBury, C. S., Brooks-Bartlett, J. C., Walsh, S. P. & Garman, E. F. (2018). Protein Sci. 27, 217–228.  Web of Science CrossRef CAS PubMed Google Scholar
First citationBury, C. S., Carmichael, I. & Garman, E. F. (2017). J. Synchrotron Rad. 24, 7–18.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBury, C. S., Carmichael, I., McGeehan, J. E. & Garman, E. F. (2016). Radiat. Phys. Chem. 128, 118–125.  Web of Science CrossRef CAS Google Scholar
First citationBury, C. S. & Garman, E. F. (2018). J. Appl. Cryst. 51, 952–962.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBury, C. S., McGeehan, J. E., Antson, A. A., Carmichael, I., Gerstel, M., Shevtsov, M. B. & Garman, E. F. (2016). Acta Cryst. D72, 648–657.  Web of Science CrossRef IUCr Journals Google Scholar
First citationChapman, H. N., Caleman, C. & Timneanu, N. (2014). Philos. Trans. R. Soc. B, 369, 20130313.  Web of Science CrossRef Google Scholar
First citationCoggle, J. E. (1983). Biological Effects of Radiation. New York: Taylor & Francis.  Google Scholar
First citationCohen, A. E., Doukov, T. & Soltis, M. S. (2016). Protein Pept. Lett. 23, 283–290.  CAS PubMed Google Scholar
First citationConcha, N. O., Rasmussen, B. A., Bush, K. & Herzberg, O. (1996). Structure, 4, 823–836.  CrossRef CAS PubMed Web of Science Google Scholar
First citationCorbett, M. C., Latimer, M. J., Poulos, T. L., Sevrioukova, I. F., Hodgson, K. O. & Hedman, B. (2007). Acta Cryst. D63, 951–960.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationDe la Mora, E., Carmichael, I. & Garman, E. F. (2011). J. Synchrotron Rad. 18, 346–357.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationDickerson, J. L. & Garman, E. F. (2019). J. Synchrotron Rad. 26, 922–930.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationDickerson, J. L., McCubbin, P. T. N. & Garman, E. F. (2020). J. Appl. Cryst. 53, 549–560.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationDubnovitsky, A. P., Ravelli, R. B., Popov, A. N. & Papageorgiou, A. C. (2005). Protein Sci. 14, 1498–1507.  Web of Science CrossRef PubMed CAS Google Scholar
First citationEbrahim, A., Moreno-Chicano, T., Appleby, M. V., Chaplin, A. K., Beale, J. H., Sherrell, D. A., Duyvesteyn, H. M. E., Owada, S., Tono, K., Sugimoto, H., Strange, R. W., Worrall, J. A. R., Axford, D., Owen, R. L. & Hough, M. A. (2019). IUCrJ, 6, 543–551.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationEvans, P. (2006). Acta Cryst. D62, 72–82.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationFioravanti, E., Vellieux, F. M. D., Amara, P., Madern, D. & Weik, M. (2007). J. Synchrotron Rad. 14, 84–91.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationFischer, M. (2021). Q. Rev. Biophys. 54, e1.  Web of Science CrossRef PubMed Google Scholar
First citationFisher, S. J., Levik, K. E., Williams, M. A., Ashton, A. W. & McAuley, K. E. (2015). J. Appl. Cryst. 48, 927–932.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationFraser, J. S., van den Bedem, H., Samelson, A. J., Lang, P. T., Holton, J. M., Echols, N. & Alber, T. (2011). Proc. Natl Acad. Sci. USA, 108, 16247–16252.  Web of Science CrossRef CAS PubMed Google Scholar
First citationGalli, L., Son, S.-K., Klinge, M., Bajt, S., Barty, A., Bean, R., Betzel, C., Beyerlein, K. R., Caleman, C., Doak, R. B., Duszenko, M., Fleckenstein, H., Gati, C., Hunt, B., Kirian, R. A., Liang, M., Nanao, M. H., Nass, K., Oberthür, D., Redecke, L., Shoeman, R., Stellato, F., Yoon, C. H., White, T. A., Yefanov, O., Spence, J. & Chapman, H. N. (2015). Struct. Dyn. 2, 041703.  Web of Science CrossRef PubMed Google Scholar
First citationGarman, E. F. (2010). Acta Cryst. D66, 339–351.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationGarman, E. F. & Owen, R. L. (2006). Acta Cryst. D62, 32–47.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationGarman, E. F. & Schneider, T. R. (1997). J. Appl. Cryst. 30, 211–237.  CrossRef Web of Science IUCr Journals Google Scholar
First citationGarman, E. F. & Weik, M. (2023). Curr. Opin. Struct. Biol. 82, 102662.  Web of Science CrossRef PubMed Google Scholar
First citationGerstel, M., Deane, C. M. & Garman, E. F. (2015). J. Synchrotron Rad. 22, 201–212.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationGildea, R. J., Beilsten-Edmands, J., Axford, D., Horrell, S., Aller, P., Sandy, J., Sanchez-Weatherby, J., Owen, C. D., Lukacik, P., Strain-Damerell, C., Owen, R. L., Walsh, M. A. & Winter, G. (2022). Acta Cryst. D78, 752–769.  Web of Science CrossRef IUCr Journals Google Scholar
First citationGotthard, G., Aumonier, S., De Sanctis, D., Leonard, G., von Stetten, D. & Royant, A. (2019). IUCrJ, 6, 665–680.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationHalsted, T. P., Yamashita, K., Gopalasingam, C. C., Shenoy, R. T., Hirata, K., Ago, H., Ueno, G., Blakeley, M. P., Eady, R. R., Antonyuk, S. V., Yamamoto, M. & Hasnain, S. S. (2019). IUCrJ, 6, 761–772.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationHelliwell, J. R. (1988). J. Cryst. Growth, 90, 259–272.  CrossRef CAS Web of Science Google Scholar
First citationHirata, K., Shinzawa-Itoh, K., Yano, N., Takemura, S., Kato, K., Hatanaka, M., Muramoto, K., Kawahara, T., Tsukihara, T., Yamashita, E., Tono, K., Ueno, G., Hikima, T., Murakami, H., Inubushi, Y., Yabashi, M., Ishikawa, T., Yamamoto, M., Ogura, T., Sugimoto, H., Shen, J. R., Yoshikawa, S. & Ago, H. (2014). Nat. Methods, 11, 734–736.  Web of Science CrossRef CAS PubMed Google Scholar
First citationHolton, J. M. (2007). J. Synchrotron Rad. 14, 51–72.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationHolton, J. M. (2009). J. Synchrotron Rad. 16, 133–142.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationHorrell, S., Antonyuk, S. V., Eady, R. R., Hasnain, S. S., Hough, M. A. & Strange, R. W. (2016). IUCrJ, 3, 271–281.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationHowells, M. R., Beetz, T., Chapman, H. N., Cui, C., Holton, J. M., Jacobsen, C. J., Kirz, J., Lima, E., Marchesini, S., Miao, H., Sayre, D., Shapiro, D. A., Spence, J. C. H. & Starodub, D. (2009). J. Electron Spectrosc. Relat. Phenom. 170, 4–12.  Web of Science CrossRef CAS Google Scholar
First citationJones, G. D., Lea, J. S., Symons, M. C. & Taiwo, F. A. (1987). Nature, 330, 772–773.  CrossRef CAS PubMed Google Scholar
First citationLang, P. T., Ng, H.-L., Fraser, J. S., Corn, J. E., Echols, N., Sales, M., Holton, J. M. & Alber, T. (2010). Protein Sci. 19, 1420–1431.  Web of Science CrossRef CAS PubMed Google Scholar
First citationMasmaliyeva, R. C., Babai, K. H. & Murshudov, G. N. (2020). Acta Cryst. D76, 926–937.  Web of Science CrossRef IUCr Journals Google Scholar
First citationMora, E. de la, Coquelle, N., Bury, C. S., Rosenthal, M., Holton, J. M., Carmichael, I., Garman, E. F., Burghammer, M., Colletier, J.-P. & Weik, M. (2020). Proc. Natl Acad. Sci. USA, 117, 4142–4151.  Web of Science PubMed Google Scholar
First citationNanao, M. H., Sheldrick, G. M. & Ravelli, R. B. G. (2005). Acta Cryst. D61, 1227–1237.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationNass, K., Foucar, L., Barends, T. R. M., Hartmann, E., Botha, S., Shoeman, R. L., Doak, R. B., Alonso-Mori, R., Aquila, A., Bajt, S., Barty, A., Bean, R., Beyerlein, K. R., Bublitz, M., Drachmann, N., Gregersen, J., Jönsson, H. O., Kabsch, W., Kassemeyer, S., Koglin, J. E., Krumrey, M., Mattle, D., Messerschmidt, M., Nissen, P., Reinhard, L., Sitsel, O., Sokaras, D., Williams, G. J., Hau-Riege, S., Timneanu, N., Caleman, C., Chapman, H. N., Boutet, S. & Schlichting, I. (2015). J. Synchrotron Rad. 22, 225–238.  Web of Science CrossRef CAS IUCr Journals

Comments (0)

No login
gif