Pannonibacter tanglangensis sp. nov., a New Species Isolated from Pond Sediment

Bandyopadhyay, S., & Das, S. K. (2016). Functional analysis of ars gene cluster of Pannonibacter indicus strain HT23T (DSM 23407T) and identification of a proline residue essential for arsenate reductase activity. Applied Microbiology and Biotechnology, 100, 3235–3244.

Article  CAS  PubMed  Google Scholar 

Bandyopadhyay, S., Schumann, P., & Das, S. K. (2013). Pannonibacter indica sp. nov., a highly arsenate-tolerant bacterium isolated from a hot spring in India. Archives of Microbiology, 195, 1–8.

Article  CAS  PubMed  Google Scholar 

Blin, K., Shaw, S., Augustijn, H. E., Reitz, Z. L., Biermann, F., Alanjary, M., Fetter, A., Terlouw, B. R., Metcalf, W. W., Helfrich, E. J. N., et al. (2023). antiSMASH 7.0: New and improved predictions for detection, regulation, chemical structures and visualisation. Nucleic Acids Research, 51, W46–W50.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Borsodi, A. K., Micsinai, A., Kovács, G., Tóth, E., Schumann, P., Kovács, A. L., Böddi, B., & Márialigeti, K. (2003). Pannonibacter phragmitetus gen. nov., sp. nov., a novel alkalitolerant bacterium isolated from decomposing reed rhizomes in a Hungarian soda lake. International Journal of Systematic and Evolutionary Microbiology, 53, 555–561.

Article  CAS  PubMed  Google Scholar 

Chun, J., Oren, A., Ventosa, A., Christensen, H., Arahal, D. R., da Costa, M. S., Rooney, A. P., Yi, H., Xu, X. W., De Meyer, S., et al. (2018). Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. International Journal of Systematic and Evolutionary Microbiology, 68, 461–466.

Article  CAS  PubMed  Google Scholar 

Delgado, S., Suárez, A., & Mayo, B. (2006). Identification of dominant bacteria in feces and colonic mucosa from healthy Spanish adults by culturing and by 16S rDNA sequence analysis. Digestive Diseases and Sciences, 51, 744–751.

Article  PubMed  Google Scholar 

Gallardo, A., Merino Bueno, M. D. C., Sango Merino, C., Suárez Laurés, A. M., de la Torre-Fernández, M., & Sánchez Álvarez, E. (2020). First case of bacteriemia caused by Pannonibacter phragmitetus in a haemodialysis patient. Nefrología, 42, 209–210.

Article  Google Scholar 

Holmes, B., Segers, P., Coenye, T., Vancanneyt, M., & Vandamme, P. (2006). Pannonibacter phragmitetus, described from a Hungarian soda lake in 2003, had been recognized several decades earlier from human blood cultures as Achromobacter groups B and E. International Journal of Systematic and Evolutionary Microbiology, 56, 2945–2948.

Article  CAS  PubMed  Google Scholar 

Huson, D. H., & Scornavacca, C. (2012). Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks. Systematic Biology, 61, 1061–1067.

Article  PubMed  Google Scholar 

Jin, D., Chen, C., Li, L., Lu, S., Li, Z., Zhou, Z., Jing, H., Xu, Y., Du, P., Wang, H., et al. (2013). Dynamics of fecal microbial communities in children with diarrhea of unknown etiology and genomic analysis of associated Streptococcus lutetiensis. BMC Microbiology, 13, 141.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kanehisa, M., Sato, Y., Kawashima, M., Furumichi, M., & Tanabe, M. (2016). KEGG as a reference resource for gene and protein annotation. Nucleic Acids Research, 44, D457–D462.

Article  CAS  PubMed  Google Scholar 

Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111–120.

Article  CAS  PubMed  Google Scholar 

Kumar, S., Stecher, G., & Tamura, K. (2016). MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870–1874.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lagesen, K., Hallin, P., Rødland, E. A., Staerfeldt, H. H., Rognes, T., & Ussery, D. W. (2007). RNAmmer: Consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Research, 35, 3100–3108.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liao, Q., Tang, J., Wang, H., Yang, W., He, L., Wang, Y., & Yang, Z. (2020). Dynamic proteome responses to sequential reduction of Cr(VI) and adsorption of Pb(II) by Pannonibacter phragmitetus BB. Journal of Hazardous Materials, 386, 121988.

Article  CAS  PubMed  Google Scholar 

Mahmoud, A. D., Lewis, S., Juričić, L., Udoh, U. A., Hartmann, S., Jansen, M. A., Ogunbayo, O. A., Puggioni, P., Holmes, A. P., Kumar, P., et al. (2016). AMP-activated protein kinase deficiency blocks the hypoxic ventilatory response and thus precipitates hypoventilation and apnea. American Journal of Respiratory and Critical Care Medicine, 193, 1032–1043.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Meier-Kolthoff, J. P., Auch, A. F., Klenk, H. P., & Goker, M. (2013). Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics, 14, 60.

Article  PubMed  PubMed Central  Google Scholar 

Meier-Kolthoff, J. P., Hahnke, R. L., Petersen, J., Scheuner, C., Michael, V., Fiebig, A., Rohde, C., Rohde, M., Fartmann, B., Goodwin, L. A., et al. (2014). Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy. Standards in Genomic Sciences, 9, 2.

Article  PubMed  PubMed Central  Google Scholar 

Price, M. N., Dehal, P. S., & Arkin, A. P. (2009). FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix. Molecular Biology and Evolution, 26, 1641–1650.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Richter, M., & Rosselló-Móra, R. (2009). Shifting the genomic gold standard for the prokaryotic species definition. Proceedings of the National Academy of Sciences, 106, 19126–19131.

Article  CAS  Google Scholar 

Saravanan, A., Kumar, P. S., Yaashikaa, P. R., Karishma, S., Jeevanantham, S., & Swetha, S. (2021). Mixed biosorbent of agro waste and bacterial biomass for the separation of Pb(II) ions from water system. Chemosphere, 277, 130236.

Article  CAS  PubMed  Google Scholar 

Shi, Y., Chai, L., Yang, Z., Jing, Q., Chen, R., & Chen, Y. (2012). Identification and hexavalent chromium reduction characteristics of Pannonibacter phragmitetus. Bioprocess and Biosystems Engineering, 35, 843–850.

Article  CAS  PubMed  Google Scholar 

Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: Molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution, 38, 3022–3027.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Urban, M., Cuzick, A., Seager, J., Wood, V., Rutherford, K., Venkatesh, S. Y., Sahu, J., Iyer, S. V., Khamari, L., De Silva, N., et al. (2022). PHI-base in 2022: A multi-species phenotype database for pathogen–host interactions. Nucleic Acids Research, 50, D837–D847.

Article  CAS  PubMed  Google Scholar 

Xi, L., Qiao, N., Liu, D., Li, J., Zhang, J., & Liu, J. (2018). Pannonibacter carbonis sp. nov., isolated from coal mine water. International Journal of Systematic and Evolutionary Microbiology, 68, 2042–2047.

Article  CAS  PubMed  Google Scholar 

Yoon, S. H., Ha, S. M., Kwon, S., Lim, J., Kim, Y., Seo, H., & Chun, J. (2017a). Introducing EzBioCloud: A taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. International Journal of Systematic and Evolutionary Microbiology, 67, 1613–1617.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yoon, S. H., Ha, S. M., Lim, J., Kwon, S., & Chun, J. (2017b). A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek, 110, 1281–1286.

Article  CAS  PubMed  Google Scholar 

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