Andert, J., Wessén, E., Börjesson, G., & Hallin, S. (2011). Temporal changes in abundance and composition of ammonia-oxidizing bacterial and archaeal communities in a drained peat soil in relation to N2O emissions. Journal of Soils and Sediments, 11, 1399–1407.
Beach, N. K., & Noguera, D. R. (2019). Design and assessment of species-level qPCR primers targeting comammox. Frontiers in Microbiology, 10, 36.
Article PubMed PubMed Central Google Scholar
Caffrey, J. M., Bano, N., Kalanetra, K., & Hollibaugh, J. T. (2007). Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME Journal, 1, 660–662.
Cao, H. L., Hong, Y. G., Li, M., & Gu, J. D. (2011). Diversity and abundance of ammonia-oxidizing prokaryotes in sediments from the coastal Pearl River estuary to the South China Sea. Antonie Van Leeuwenhoek, 100, 545–556.
Article PubMed PubMed Central Google Scholar
Chang, Y., Yin, G., Hou, L., Liu, M., Zheng, Y., Han, P., Dong, H., Liang, X., Gao, D., & Liu, C. (2021). Nitrogen removal processes coupled with nitrification in coastal sediments off the north East China Sea. Journal of Soils and Sediments, 21, 3289–3299.
Chen, Y., Zhen, Y., He, H., Lu, X., Mi, T., & Yu, Z. (2014). Diversity, abundance, and spatial distribution of ammonia-oxidizing β-proteobacteria in sediments from Changjiang Estuary and its adjacent area in East China Sea. Microbial Ecology, 67, 788–803.
Article CAS PubMed Google Scholar
Chen, Y. J., Leung, P. M., Cook, P., Wong, W. W., Hutchinson, T., Eate, V., Kessler, A. J., & Greening, C. (2022). Hydrodynamic disturbance controls microbial community assembly and biogeochemical processes in coastal sediments. ISME Journal, 16, 750–763.
Article CAS PubMed Google Scholar
Di, H. J., Cameron, K. C., Shen, J. P., Winefield, C. S., O’Callaghan, M., Bowatte, S., & He, J. Z. (2010). Ammonia-oxidizing bacteria and archaea grow under contrasting soil nitrogen conditions. FEMS Microbiology Ecology, 72, 386–394.
Article CAS PubMed Google Scholar
Fan, C., Zhang, W., Chen, X., Li, N., Li, W., Wang, Q., Duan, P., & Chen, M. (2021). Residual effects of four-year amendments of organic material on N2O production driven by ammonia-oxidizing archaea and bacteria in a tropical vegetable soil. Science of the Total Environment, 781, 146746.
Article CAS PubMed Google Scholar
French, E., Kozlowski, J. A., Mukherjee, M., Bullerjahn, G., & Bollmann, A. (2012). Ecophysiological characterization of ammonia-oxidizing archaea and bacteria from freshwater. Applied and Environmental Microbiology, 78, 5773–5780.
Article CAS PubMed PubMed Central Google Scholar
Gao, S., & Wang, Y. P. (2008). Changes in material fluxes from the Changjiang River and their implications on the adjoining continental shelf ecosystem. Continental Shelf Research, 28, 1490–1500.
He, H., Zhen, Y., Mi, T., Lu, X., & Yu, Z. (2015). Seasonal and spatial distribution of ammonia-oxidizing microorganism communities in surface sediments from the East China Sea. Acta Oceanologica Sinica, 34, 83–92.
He, H., Zhen, Y., Mi, T. Z., Fu, L. L., & Yu, Z. G. (2018). Ammonia-oxidizing archaea and bacteria differentially contribute to ammonia oxidation in sediments from adjacent waters of Rushan Bay. China. Frontiers in Microbiology, 9, 116.
Herber, J., Klotz, F., Frommeyer, B., Weis, S., Straile, D., Kolar, A., Sikorski, J., Egert, M., Dannenmann, M., & Pester, M. (2020). A single Thaumarchaeon drives nitrification in deep oligotrophic Lake Constance. Environmental Microbiology, 22, 212–228.
Article CAS PubMed Google Scholar
Hooper, A. B., Vannelli, T., Bergmann, D. J., & Arciero, D. M. (1997). Enzymology of the oxidation of ammonia to nitrite by bacteria. Antonie Van Leeuwenhoek, 71, 59–67.
Article CAS PubMed Google Scholar
Hsueh, Y. (2000). The Kuroshio in the East China Sea. Journal of Marine Systems, 24, 131–139.
Jia, Z. J., & Conrad, R. (2009). Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environmental Microbiology, 11, 1658–1671.
Article CAS PubMed Google Scholar
Jin, T., Zhang, T., Ye, L., Lee, O. O., Wong, Y. H., & Qian, P. Y. (2011). Diversity and quantity of ammonia-oxidizing archaea and bacteria in sediment of the Pearl River Estuary. Applied Microbiology Biotechnology, 90, 1137–1145.
Article CAS PubMed Google Scholar
Kallmeyer, J., Pockalny, R., Adhikari, R. R., Smith, D. C., & D’Hondt, S. (2012). Global distribution of microbial abundance and biomass in subseafloor sediment. Proceedings of the National Academy of Sciences of the United States of America, 109, 16213–16216.
Article CAS PubMed PubMed Central Google Scholar
Kataoka, T., Suzuki, K., Irino, T., Yamamoto, M., Higashi, S., & Liu, H. B. (2018). Phylogenetic diversity and distribution of bacterial and archaeal amoA genes in the East China Sea during Spring. Archives of Microbiology, 200, 329–342.
Article CAS PubMed Google Scholar
Könneke, M., Bernhard, A. E., de la Torre, J. R., Walker, C. B., Waterbury, J. B., & Stahl, D. A. (2005). Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature, 437, 543–546.
Kuypers, M. M. M., Marchant, H. K., & Kartal, B. (2018). The microbial nitrogen-cycling network. Nature Reviews Microbiology, 16, 263–276.
Article CAS PubMed Google Scholar
Kuzyakov, Y., Friedel, J. K., & Stahr, K. (2000). Review of mechanisms and quantification of priming effects. Soil Biology and Biochemistry, 32, 1485–1498.
Laffite, A., Florio, A., Andrianarisoa, K. S., Chatelliers, C. C., Schloter-Hai, B., Ndaw, S. M., Periot, C., Schloter, M., Zeller, B., Poly, F., et al. (2020). Biological inhibition of soil nitrification by forest tree species affects Nitrobacter populations. Environmental Microbiology, 22, 1141–1153.
Article CAS PubMed Google Scholar
Lam, P., Jensen, M. M., Lavik, G., McGinnis, D. F., Müller, B., Schubert, C. J., Amann, R., Thamdrup, B., & Kuypers, M. M. M. (2007). Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proceedings of the National Academy of Sciences of the United States of America, 104, 7104–7109.
Article CAS PubMed PubMed Central Google Scholar
Leininger, S., Urich, T., Schloter, M., Schwark, L., Qi, J., Nicol, G. W., Prosser, J. I., Schuster, S. C., & Schleper, C. (2006). Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature, 442, 806–809.
Article CAS PubMed Google Scholar
Li, J., Bai, J., Gao, H., & Liu, G. (2011). Distribution of ammonia-oxidizing Betaproteobacteria community in surface sediment off the Changjiang River Estuary in Summer. Acta Oceanologica Sinica, 30, 92–99.
Li, M., He, H., Mi, T., & Zhen, Y. (2022). Spatiotemporal dynamics of ammonia-oxidizing archaea and bacteria contributing to nitrification in sediments from Bohai Sea and South Yellow Sea. China. Science of the Total Environment, 825, 153972.
Article CAS PubMed Google Scholar
Lian, E. G., Yang, S. Y., Wu, H., Yang, C. F., Li, C., & Liu, J. T. (2016). Kuroshio subsurface water feeds the wintertime Taiwan Warm Current on the inner East China Sea shelf. Journal of Geophysical Research: Oceans, 121, 4790–4803.
Liu, Y. Y., Liu, J. W., Yao, P., Ge, T. T., Qiao, Y. L., Zhao, M. X., & Zhang, X. H. (2018). Distribution patterns of ammonia-oxidizing archaea and bacteria in sediments of the eastern China marginal seas. Systematic and Applied Microbiology, 41, 658–668.
Article CAS PubMed Google Scholar
Park, S. J., Park, B. J., & Rhee, S. K. (2008). Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments. Extremophiles, 12, 605–615.
Article CAS PubMed Google Scholar
Pitcher, A., Villanueva, L., Hopmans, E. C., Schouten, S., Reichart, G. J., & Damsté, J. S. S. (2011). Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone. ISME Journal, 5, 1896–1904.
Comments (0)