Ikuta KS, Swetschinski LR, Robles Aguilar G, Sharara F, Mestrovic T, Gray AP, et al. Global mortality associated with 33 bacterial pathogens in 2019: a systematic analysis for the Global Burden of Disease Study 2019. Lancet. 2022;400(10369):2221–48.
Murray CJL, Ikuta KS, Sharara F, Swetschinski L, Robles Aguilar G, Gray A, et al. Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis. Lancet. 2022;399(10325):629–55.
Limmathurotsakul D, Golding N, Dance DAB, Messina JP, Pigott DM, Moyes CL, et al. Predicted global distribution of Burkholderia pseudomallei and burden of melioidosis. Nat Microbiol. 2016;1(1):15008.
Article CAS PubMed PubMed Central Google Scholar
Organization WH. Global antimicrobial resistance and use surveillance system (GLASS) report 2022. Global antimicrobial resistance and use surveillance system (GLASS) report 2022 Geneva: World Health Organization; 2022 Licence: CC BY-NC-SA 30 IGO. 2022.
Wilke M, Heinlein W, Stiefenhofer L, Bodmann KF. Clinical and economical improvements after introducing rapid identification of bacteria and early antibiotic susceptibility testing in sepsis and bloodstream infections. Results of the PHENOMENON study. GMS Infect Dis. 2020;8:Doc25.
PubMed PubMed Central Google Scholar
Uzuriaga M, Leiva J, Guillén-Grima F, Rua M, Yuste JR. Clinical impact of rapid bacterial microbiological Identification with the MALDI-TOF MS. Antibiotics. 2023;12(12):1660.
Article PubMed PubMed Central Google Scholar
Eickelberg G, Sanchez-Pinto LN, Luo Y. Predictive modeling of bacterial infections and antibiotic therapy needs in critically ill adults. J Biomed Inform. 2020;109:103540.
Article PubMed PubMed Central Google Scholar
Giske CG, Turnidge J, Cantón R, Kahlmeter G. Update from the European Committee on Antimicrobial Susceptibility Testing (EUCAST). J Clin Microbiol. 2022;60(3):e0027621.
CLSI. Performance standards for antimicrobial disk susceptibility tests. 14th ed. CLSI standard M02. Clinical and Laboratory Standards Institute. 2024.
Lagier JC, Edouard S, Pagnier I, Mediannikov O, Drancourt M, Raoult D. Current and past strategies for bacterial culture in clinical microbiology. Clin Microbiol Rev. 2015;28(1):208–36.
Article CAS PubMed PubMed Central Google Scholar
Ransom EM, Alipour Z, Wallace MA, Burnham CA. Evaluation of optimal blood culture incubation time to maximize clinically relevant results from a contemporary blood culture instrument and media system. J Clin Microbiol. 2021;59(3):e02459-20.
Article PubMed PubMed Central Google Scholar
Quirino A, Marascio N, Peronace C, Gallo L, Barreca GS, Giancotti A, et al. Direct antimicrobial susceptibility testing (AST) from positive blood cultures using Microscan system for early detection of bacterial resistance phenotypes. Diagn Microbiol Infect Dis. 2021;101(2):115485.
Article CAS PubMed Google Scholar
Power RA, Parkhill J, de Oliveira T. Microbial genome-wide association studies: lessons from human GWAS. Nat Rev Genet. 2017;18(1):41–50.
Article CAS PubMed Google Scholar
Narasimhan V, Kim H, Lee SH, Kang H, Siddique RH, Park H, et al. Nucleic Acid Amplification-Based Technologies (NAAT)—Toward accessible, autonomous, and mobile diagnostics. Adv Mater Technol. 2023;8(20):2300230.
Miyakoshi A, Niimi H, Ueno T, Wakasugi M, Higashi Y, Miyajima Y, et al. Novel rapid method for identifying and quantifying pathogenic bacteria within four hours of blood collection. Sci Rep. 2024;14(1):1199.
Article CAS PubMed PubMed Central Google Scholar
Tan DHJ, Sun Q, Cheng X, Liu J, Liu J, Li Q, Dai L. Application of multiplex fluorescence polymerase chain reaction for detecting pathogenic bacteria in sputum samples from patients with lower respiratory tract infection. Infect Drug Resist. 2023;2023(16):6999–7005.
Harris M, Fasolino T, Davis NJ, Ivankovic D, Brownlee N. Multiplex detection of antimicrobial resistance genes for rapid antibiotic guidance of urinary tract infections. Microbiol Res. 2023;14(2):591–602.
Kalita MJ, Dutta K, Hazarika G, Dutta R, Kalita S, Das PP, et al. In-house reverse transcriptase polymerase chain reaction for detection of SARS-CoV-2 with increased sensitivity. Sci Rep. 2021;11(1):17878.
Article CAS PubMed PubMed Central Google Scholar
Sano H, Wakui A, Kawachi M, Washio J, Abiko Y, Mayanagi G, et al. Profiling system of oral microbiota utilizing polymerase chain reaction-restriction fragment length polymorphism analysis. J Oral Biosci. 2021;63(3):292–7.
Article CAS PubMed Google Scholar
Hernández I, Sant C, Martínez R, Fernández C. Design of bacterial strain-specific qPCR assays using NGS data and publicly available resources and its application to track biocontrol strains. Front Microbiol. 2020;11:208.
Article PubMed PubMed Central Google Scholar
Dung TTN, Phat VV, Vinh C, Lan NPH, Phuong NLN, Ngan LTQ, et al. Development and validation of multiplex real-time PCR for simultaneous detection of six bacterial pathogens causing lower respiratory tract infections and antimicrobial resistance genes. BMC Infect Dis. 2024;24(1):164.
Article CAS PubMed PubMed Central Google Scholar
Bang E, Oh S, Cho HW, Park D-h, Chang HE, Park JS, et al. Development of diagnostic tests for pathogen identification and detection of antimicrobial resistance on WHO global priority pathogens using modular real-time nucleic acid amplification test. Int Microbiol. 2023;26(3):563–77.
Article CAS PubMed Google Scholar
Bang E, Oh S, Cho HW, Park DH, Chang HE, Park JS, et al. Development of diagnostic tests for pathogen identification and detection of antimicrobial resistance on WHO global priority pathogens using modular real-time nucleic acid amplification test. Int Microbiol. 2023;26(3):563–77.
Article CAS PubMed Google Scholar
Li Y, Xiu L, Wang L, Zhang L, Wang F, Peng J. Rapid detection of antimicrobial resistance in Mycoplasma genitalium by high-resolution melting analysis with unlabeled probes. Microbiol Spectr. 2022;10(4):e01014-e1022.
Article PubMed PubMed Central Google Scholar
Pakdeerat S, Boonklang P, Angchagun K, Chomkatekaew C, Apichaidejudom N, Dokket Y, et al. Benchmarking CRISPR-BP34 for point-of-care melioidosis detection in low-income and middle-income countries: a molecular diagnostics study. Lancet Microbe. 2024;5(4):e379–89.
Article PubMed PubMed Central Google Scholar
Trung NT, Son LHP, Hien TX, Quyen DT, Bang MH, Song LH. CRISPR-Cas12a combination to alleviate the false-positive in loop-mediated isothermal amplification-based diagnosis of Neisseria meningitidis. BMC Infect Dis. 2022;22(1):429.
Article PubMed PubMed Central Google Scholar
Kham-Kjing N, Ngo-Giang-Huong N, Tragoolpua K, Khamduang W, Hongjaisee S. Highly specific and rapid detection of hepatitis c virus using RT-LAMP-Coupled CRISPR-Cas12 assay. Diagnostics (Basel). 2022;12(7):1524.
Article CAS PubMed Google Scholar
Thakku SG, Lirette J, Murugesan K, Chen J, Theron G, Banaei N, et al. Genome-wide tiled detection of circulating Mycobacterium tuberculosis cell-free DNA using Cas13. Nat Commun. 2023;14(1):1803.
Article CAS PubMed PubMed Central Google Scholar
Tomita N, Mori Y, Kanda H, Notomi T. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat Protoc. 2008;3(5):877–82.
Article CAS PubMed Google Scholar
Piepenburg O, Williams CH, Stemple DL, Armes NA. DNA Detection Using Recombination Proteins. PLoS Biol. 2006;4(7):e204.
Article PubMed PubMed Central Google Scholar
Park J-W. Principles and applications of loop-mediated isothermal amplification to point-of-care tests. Biosensors. 2022;12:857.
Article CAS PubMed PubMed Central Google Scholar
Srivastava P, Prasad D. Isothermal nucleic acid amplification and its uses in modern diagnostic technologies. 3 Biotech. 2023;13(6):200.
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