Abedi A, Hajiahmadi Z, Kordrostami M, Esmaeel Q, Jacquard C (2021) Analyses of Lysin-motif Receptor-like kinase (LysM-RLK) gene family in allotetraploid Brassica napus L. and its progenitor species: an in Silico study. Cells 11(1):37. https://doi.org/10.3390/cells11010037
Article CAS PubMed PubMed Central Google Scholar
An Y-M, Song L-L, Liu Y-R, Shu Y-J, Guo C-H (2016) De Novo transcriptional analysis of alfalfa in response to Saline-Alkaline stress. Front Plant Sci 7:123. https://doi.org/10.3389/fpls.2016.00123
Ashraf M, Foolad M (2007) Roles of glycine betaine and proline in improving plant abiotic stress resistance. Environ Exp Bot 59(2):206–216. https://doi.org/10.1016/j.envexpbot.2005.12.005
Bailey TL, Johnson J, Grant CE, Noble WS (2015) The MEME suite. Nucleic Acids Res 43(W1):W39–W49. https://doi.org/10.1093/nar/gkv416
Article CAS PubMed PubMed Central Google Scholar
Benedito VA, Torres-Jerez I, Murray JD, Andriankaja A, Allen S, Kakar K, Wandrey M, Verdier J, Zuber H, Ott T, Moreau S, Niebel A, Frickey T, Weiller G, He J, Dai X, Zhao PX, Tang Y, Udvardi MK (2008) A gene expression atlas of the model legume Medicago truncatula. Plant J 55(3):504–513. https://doi.org/10.1111/j.1365-313X.2008.03519.x
Article CAS PubMed Google Scholar
Brocker C, Vasiliou M, Carpenter S, Carpenter C, Zhang Y, Wang X, Kotchoni SO, Wood AJ, Kirch H-H, Kopečný D, Nebert DW, Vasiliou V (2013) Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics. Planta 237(1):189–210. https://doi.org/10.1007/s00425-012-1749-0
Article CAS PubMed Google Scholar
Brooks PJ, Theruvathu JA (2005) DNA adducts from acetaldehyde: implications for alcohol-related carcinogenesis. Alcohol 35(3):197–203. https://doi.org/10.1016/j.alcohol.2005.03.009
Cannon SB, Mitra A, Baumgarten A, Young ND, May G (2004) The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol 4:10. https://doi.org/10.1186/1471-2229-4-10
Article PubMed PubMed Central Google Scholar
Cao J, Shi F (2012) Evolution of the RALF gene family in plants: gene duplication and selection patterns. Evol Bioinform Online 8:271–292. https://doi.org/10.4137/EBO.S9652
Article CAS PubMed PubMed Central Google Scholar
Carmona-Molero R, Jimenez-Lopez JC, Caballo C, Gil J, Millán T, Die JV (2021) Aldehyde dehydrogenase 3 is an expanded gene family with potential adaptive roles in Chickpea. Plants 10(11):2429. https://doi.org/10.3390/plants10112429
Article CAS PubMed PubMed Central Google Scholar
Chen C, Wu Y, Li J, Wang X, Zeng Z, Xu J, Liu Y, Feng J, Chen H, He Y, Xia R (2023) TBtools-II: A one for all, all for one bioinformatics platform for biological big-data mining. Mol Plant 16(11):1733–1742. https://doi.org/10.1016/j.molp.2023.09.010
Article CAS PubMed Google Scholar
Cronk QC (2001) Plant evolution and development in a post-genomic context. Nat Rev Genet 2(8):607–619. https://doi.org/10.1038/35084556
Article CAS PubMed Google Scholar
Elsanosi HA, Zhang J, Mostafa S, Geng X, Zhou G, Awdelseid AHM, Song L (2024) Genome-wide identification, structural and gene expression analysis of BTB gene family in soybean. BMC Plant Biol 24:663. https://doi.org/10.1186/s12870-024-03706-5
Article CAS PubMed PubMed Central Google Scholar
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39(4):783–791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x
Flowers JM, Purugganan MD (2008) The evolution of plant genomes: scaling up from a population perspective. Flowers 18(6):565–570. https://doi.org/10.1016/j.gde.2008.11.005
Gao C, Han B (2009) Evolutionary and expression study of the aldehyde dehydrogenase (ALDH) gene superfamily in rice (Oryza sativa). Gene 431(1–2):86–94. https://doi.org/10.1016/j.gene.2008.11.010
Article CAS PubMed Google Scholar
García-Ríos M, Fujita T, LaRosa PC, Locy RD, Clithero JM, Bressan RA, Csonka LN (1997) Cloning of a polycistronic cDNA from tomato encoding γ-glutamyl kinase and γ-glutamyl phosphate reductase. Proc Natl Acad Sci USA 94(15):8249–8254. https://doi.org/10.1073/pnas.94.15.8249
Article PubMed PubMed Central Google Scholar
Gautam R, Meena RK, Woch N, Kirti PB (2020) Ectopic expression of BrALDH7B2 gene encoding an antiquitin from Brassica rapa confers tolerance to abiotic stresses and improves photosynthetic performance under salt stress in tobacco. Environ Exp Bot 180:104223. https://doi.org/10.1016/j.envexpbot.2020.104223
Guo J, Sun W, Liu H, Chi J, Odiba AS, Li G, Jin L, Xin C (2020) Aldehyde dehydrogenase plays crucial roles in response to lower temperature stress in Solanum tuberosum and Nicotiana benthamiana. Plant Sci 297:110525. https://doi.org/10.1016/j.plantsci.2020.110525
Article CAS PubMed Google Scholar
He D, Lei Z, Xing H, Tang B (2014) Genome-wide identification and analysis of the aldehyde dehydrogenase (ALDH) gene superfamily of Gossypium raimondii. Gene 549(1):123–133. https://doi.org/10.1016/j.gene.2014.07.054
Article CAS PubMed Google Scholar
Hou Q, Bartels D (2015) Comparative study of the aldehyde dehydrogenase (ALDH) gene superfamily in the glycophyte Arabidopsis thaliana and Eutrema halophytes. Ann Botany 115(3):465–479. https://doi.org/10.1093/aob/mcu152
Ishitani M, Nakamura T, Han S-Y, Takabe T Expression of the betaine aldehyde dehydrogenase gene in barley in response to osmotic stress and abscisic acid. Plant Mol Biol 27: 307–315
Islam MS, Ghosh A (2022) Evolution, family expansion, and functional diversification of plant aldehyde dehydrogenases. Gene 829:146522. https://doi.org/10.1016/j.gene.2022.146522
Article CAS PubMed Google Scholar
Islam MS, Hasan MS, Hasan MN, Prodhan SH, Islam T, Ghosh A (2021) Genome-wide identification, evolution, and transcript profiling of aldehyde dehydrogenase superfamily in potato during development stages and stress conditions. Sci Rep 11:18284. https://doi.org/10.1038/s41598-021-97657-9
Article CAS PubMed PubMed Central Google Scholar
Islam MS, Mohtasim M, Islam T, Ghosh A (2022) Aldehyde dehydrogenase superfamily in sorghum: genome-wide identification, evolution, and transcript profiling during development stages and stress conditions. BMC Plant Biol 22:316. https://doi.org/10.1186/s12870-022-03706-5
Article CAS PubMed PubMed Central Google Scholar
Jimenez-Lopez JC (2016) Narrow-leafed lupin (Lupinus angustifolius L.) functional identification and characterization of the aldehyde dehydrogenase (ALDH) gene superfamily. Plant Gene 6:67–76. https://doi.org/10.1016/j.plgene.2016.03.007
Jimenez-Lopez JC, Lopez-Valverde FJ, Robles-Bolivar P, Lima-Cabello E, Gachomo EW, Kotchoni SO (2016) Genome-Wide identification and functional classification of tomato (Solanum lycopersicum) aldehyde dehydrogenase (ALDH) gene superfamily. PLoS ONE 11(10):e0164798. https://doi.org/10.1371/journal.pone.0164798
Article CAS PubMed PubMed Central Google Scholar
Kirch H-H, Bartels D, Wei Y, Schnable PS, Wood AJ (2004) The ALDH gene superfamily of Arabidopsis. Trends Plant Sci 9(8):371–377. https://doi.org/10.1016/j.tplants.2004.06.004
Article CAS PubMed Google Scholar
Kirch HH, Nair A, Bartels D (2001) Novel ABA- and dehydration-inducible aldehyde dehydrogenase genes isolated from the resurrection plant Craterostigma plantagineum and Arabidopsis thaliana. Plant J 28(5):555–567. https://doi.org/10.1046/j.1365-313x.2001.01176.x
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