Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37:W202–208

Article  CAS  PubMed  PubMed Central  Google Scholar 

Barford D, Das, Amit K, Marie-Pierre (1998) The structure and mechanism of protein phosphatases: insights into catalysis and regulation. Ann Rev Biophy Biomol Struct 23:133–164

Article  Google Scholar 

Bhaskara GB, Nguyen TT, Verslues PE (2012) Unique drought resistance functions of the highly ABA-induced clade A protein phosphatase 2Cs. Plant Physiol 160(1):379–395

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bork P, Brown NP, Hegyi H, Schultz J (1996) The protein phosphatase 2C (PP2C) superfamily: detection of bacterial homologues. Protein Sci 5(7):1421–1425

Cao J, Jiang M, Li P, Chu Z (2016) Genome-wide identification and evolutionary analyses of the PP2C gene family with their expression profiling in response to multiple stresses in Brachypodium distachyon. Bmc Genom 17(1):175

Article  Google Scholar 

Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T (2009) TrimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25(15):1972–1973

Article  PubMed  PubMed Central  Google Scholar 

Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, He Y, Xia R (2020) TBtools: an integrative toolkit developed for interactive analyses of big biological data. Mol Plant 13(8):1194–1202

Article  CAS  PubMed  Google Scholar 

Chen S, Deng J, Cheng P, Zhang Z, Wang Y, Chen S, Yan T, Tianyu W, Yang G (2022) Transcriptome-wide identification of walnut PP2C family genes in response to external stimulus. Bmc Genom 23(1):640

Article  CAS  Google Scholar 

Cohen P (1989) The structure and regulation of protein phosphatases. Annu Rev Biochem 58:453–508

Article  CAS  PubMed  Google Scholar 

Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Soltis PS, Carlson JE, Arumuganathan K, Barakat A, Albert VA, Ma H, dePamphilis CW (2006) Widespread genome duplications throughout the history of flowering plants. Genome Res 16(6):738–749

Article  CAS  PubMed  PubMed Central  Google Scholar 

Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32(5):1792–1797

Article  CAS  PubMed  PubMed Central  Google Scholar 

Fan K, Yuan S, Chen J, Chen Y, Li Z, Lin W, Zhang Y, Liu J, Lin W (2019) Molecular evolution and lineage-specific expansion of the PP2C family in Zea mays. Planta 250(5):1521–1538

Article  CAS  PubMed  Google Scholar 

Finkelstein RR (2010) The role of hormones during seed development and germination. In: Davies PJ (eds) Plant hormones: biosynthesis, signal transduction, action! Springer, Dordrecht, pp 549–573

Finkelstein RR, Gampala SS, Rock CD (2002) Abscisic acid signaling in seeds and seedlings. Plant Cell 14(Suppl):S15–45

Article  CAS  PubMed  PubMed Central  Google Scholar 

Fuchs S, Grill E, Meskiene I, Schweighofer A (2013) Type 2 C protein phosphatases in plants. FEBS J 280(2):681–693

Article  CAS  PubMed  Google Scholar 

Guo Y, Shi Y, Wang Y, Liu F, Li Z, Qi J, Wang Y, Zhang J, Yang S, Wang Y, Gong Z (2023) The clade F PP2C phosphatase ZmPP84 negatively regulates drought tolerance by repressing stomatal closure in maize. New Phytol 237(5):1728–1744

Article  CAS  PubMed  Google Scholar 

Horton P, Park KJ, Obayashi T, Fujita N, Harada H, Adams-Collier CJ, Nakai K (2007) WoLF PSORT: protein localization predictor. Nucleic Acids Res 35(Web Server issue): W585–587

Hubbard MJ, Cohen P (1993) On target with a new mechanism for the regulation of protein phosphorylation. Trends Biochem Sci 18(5):172–177

Hunter T (1995) Protein kinases and phosphatases: the Yin and Yang of protein phosphorylation and signaling. Cell 80(2):225–236

Article  CAS  PubMed  Google Scholar 

Hurst LD (2002) The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends Genet 18(9):486

Article  PubMed  Google Scholar 

Juretic N, Hoen DR, Huynh ML, Harrison PM, Bureau TE (2005) The evolutionary fate of MULE-mediated duplications of host gene fragments in rice. Genome Res 15(9):1292–1297

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kerk D, Templeton G, Moorhead GB (2008) Evolutionary radiation pattern of novel protein phosphatases revealed by analysis of protein data from the completely sequenced genomes of humans, green algae, and higher plants. Plant Physiol 146(2):351–367

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kumar S, Stecher G, Tamura K (2015) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33(7):1870–1874

Article  Google Scholar 

Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in Silico analysis of promoter sequences. Nucleic Acids Res 30(1):325–327

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li L, Liu J, Liang Q, Feng Y, Wang C, Wu S, Li Y (2021) Downregulation of lncRNA PpL-T31511 and Pp-miRn182 Promotes Hydrogen Cyanamide-Induced Endodormancy Release through the PP2C-H2O2 Pathway in Pear (Pyrus pyrifolia). Int J Mol Sci 22(21)

Long M, Betrán E, Thornton K, Wang W (2003) The origin of new genes: glimpses from the young and old. Nat Rev Genet 4(11):865–875

Article  CAS  PubMed  Google Scholar 

Lu S, Wang J, Chitsaz F, Derbyshire MK, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Marchler GH, Song JS, Thanki N, Yamashita RA, Yang M, Zhang D, Zheng C, Lanczycki CJ, Marchler-Bauer A (2020) CDD/SPARCLE: the conserved domain database in 2020. Nucleic Acids Res 48(D1):D265–d268

Article  CAS  PubMed  Google Scholar 

Lv Q, Qiu J, Liu J, Li Z, Zhang W, Wang Q, Fang J, Pan J, Chen Z, Cheng W, Barker MS, Huang X, Wei X, Cheng K (2020) The Chimonanthus salicifolius genome provides insight into magnoliid evolution and flavonoid biosynthesis. Plant J 103(5):1910–1923

Article  CAS  PubMed  Google Scholar 

Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290(5494):1151–1155

Article  CAS  PubMed  Google Scholar 

McCarty DR (1995) Genetic control and integration of maturation and germination pathways in seed development. Annu Rev Plant Biol 46:71–93

Article  CAS  Google Scholar 

Nishimura N, Sarkeshik A, Nito K, Park SY, Wang A, Carvalho PC, Lee S, Caddell DF, Cutler SR, Chory J, Yates JR, Schroeder JI (2010) PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2 C-interacting proteins in Arabidopsis. Plant J 61(2):290–299

Article  CAS  PubMed  Google Scholar 

Panchy N, Lehti-Shiu M, Shiu S-H (2016) Evolution of gene duplication in plants. Plant Physiol 171(4):2294–2316

Article  CAS  PubMed  PubMed Central  Google Scholar 

Qiao X, Li Q, Yin H, Qi K, Li L, Wang R, Zhang S, Paterson AH (2019) Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants. Genome Biol 20(1):38

Article  PubMed  PubMed Central  Google Scholar 

Qiu J, Ni L, Xia X, Chen S, Zhang Y, Lang M, Li M, Liu B, Pan Y, Li J, Zhang X (2022) Genome-wide analysis of the protein phosphatase 2 C genes in tomato. Genes (Basel) 13(4):604

Schweighofer A, Hirt H, Meskiene I (2004) Plant PP2C phosphatases: emerging functions in stress signaling. Trends Plant Sci 9(5):236–243

Article  CAS  PubMed  Google Scholar 

Shang J, Tian J, Cheng H, Yan Q, Li L, Jamal A, Xu Z, Xiang L, Saski CA, Jin S, Zhao K, Liu X, Chen L (2020) The chromosome-level wintersweet (Chimonanthus praecox) genome provides insights into floral scent biosynthesis and flowering in winter. Genome Biol 21(1):200

Article  CAS  PubMed