Chronic pain, defined as pain persisting for three months or longer, is a prevalent and debilitating disorder affecting an estimated 11% to 40% of the global population,1 resulting in significant disability and socio-economic challenges globally.2 Advanced age is acknowledged as an independent risk factor for chronic pain,3 yet the notion that chronic pain accelerates aging remains contentious. Particular academics have noted indicators of expedited aging in individuals with chronic pain, such as reduced life expectancy,4 elevated mortality rates,5 shortened telomere lengths,6 and accelerated brain aging.7 However, other scholars have not identified such a correlation.8,9
Epigenetic clocks, derived from DNA methylation (DNAm) patterns, effectively quantify an individual’s biological age and demonstrate strong correlations with the prevalence of age-related chronic diseases and the risk of age-associated mortality, offering a robust instrument for assessing the biological aging process.10 The advancement of epigenetic clocks provides novel insights for a comprehensive examination of the correlation between pain and aging. The Yenisel Cruz-Almeida’s team11,12 and Edwin N. Aroke’s team13 identified connections between epigenetic age acceleration and pain-related metrics, such as pain status, intensity, disability, and pain-associated depressive symptoms. However, certain research has indicated that varying pain phenotypes do not result in expedited alterations in epigenetic age.14 Nonetheless, these cohort studies exhibited limited sample numbers and insufficient population variety for comparative analysis.
Furthermore, numerous studies indicate that confounders linked to chronic pain, including sociodemographics,15,16 analgesic consumption,17 comorbidities,18 and lifestyle behaviors,19,20 also exert some influence on the epigenetic clock. A comprehensive examination of pertinent confounders in the relationship between chronic pain and epigenetic aging could facilitate the discovery of shared systemic mechanisms that may serve as targets for intervention or treatment. Additionally, researchers have recently developed an enhanced version of GrimAge, termed GrimAge2. GrimAge2 has demonstrated enhanced efficacy in forecasting mortality rates across multi-ethnic groups and age-related disorders relative to GrimAge.21 To our knowledge, no research has yet employed GrimAge2, this potent epigenetic clock, to investigate the correlation between chronic pain and epigenetic age acceleration. Therefore, the objective of this study was to employ the National Health and Nutrition Examination Survey (NHANES) database, incorporating three generations of six epigenetic clocks, including GrimAge2, to thoroughly examine the intricate relationships between chronic pain and epigenetic clocks in a nationally representative US sample, with the intent of identifying potential shared systemic processes and determining the most suitable chronic pain-related epigenetic clocks.
MethodsStudy PopulationNHANES is a significant public health survey administered by the National Centre for Health Statistics (NCHS) that provides essential data for analyzing the health and nutritional status of the US non-institutionalized population. NHANES utilizes a stratified multistage sampling technique to acquire a representative sample of US inhabitants. All participants submitted written informed permission at the time of recruitment. This study utilized de-identified NHANES data, and the Ethics Committee of the First Affiliated Hospital of Fujian Medical University exempted further Institutional Review Board review of these data, adhering to the guidelines of the US Department of Health and Human Services.22 This study used data from two successive NHANES cycles (1999–2000, 2001–2002) to examine the relationship between chronic pain and epigenetic clocks. Participants were selected based on the availability of both blood DNAm data and completion of the Miscellaneous Pain Questionnaire (MPQ). The final cohort comprised 2,532 individuals aged 50 or older, with the recruitment process illustrated in Figure 1.
Figure 1 Flow chart of participants selection.
Abbreviation: NHANES, National Health and Nutrition Examination Survey.
Assessment of Chronic PainInformation regarding the duration and location of self-reported pain was gathered from respondents aged 20 and older through a series of home interview questions. Participants who had endured pain exceeding 24 hours in the preceding month were subsequently inquired about the duration of their discomfort. The 11th version of the International Classification of Diseases (ICD-11) defines chronic pain as pain persisting for over three months.23 Consequently, participants enduring discomfort for over three months (MPQ100 = 1, MPQ110 = 3 or 4) were designated as the chronic pain group, and the remainder were classified as the non-chronic pain group.
Epigenetic Age and Epigenetic Age AccelerationSamples from individuals aged 50 and above who had undergone whole-blood DNA purification, were obtained for DNAm analysis. The analysis was conducted at Duke University laboratory using Illumina EPIC microbead chip arrays. Raw methylation data in IDAT format was processed for preprocessing and normalization. Details of the DNAm epigenetic clocks are documented in the DNA Methylation Array and Epigenetic Biomarkers Data Documentation. We calculated six epigenetic clocks across three generations, comprising the first generation (Horvath’s epigenetic age,24 Hannum’s epigenetic age25), the second generation (PhenoAge,26 GrimAge,27 GrimAge2),21 and the third generation [Dunedin Pace of Aging methylation (DunedinPoAm)28]. For the first and second generations, we determined age-adjusted epigenetic age acceleration, which is the residual from the linear regression of epigenetic age on chronological age. This algorithm encompassed Horvath’s epigenetic age acceleration, Hannum’s epigenetic age acceleration, PhenoAge acceleration (PhenoAgeAccel), GrimAge acceleration (GrimAgeAccel), and GrimAge2 acceleration (GrimAge2Accel), all quantified in units of years. Epigenetic age acceleration, rather than raw epigenetic age, is more strongly linked to the risk of age-related disorders and mortality. The difference between an individual’s epigenetic age and chronological age may better predict health outcomes related to aging. Therefore, we focused on the correlation between chronic pain and epigenetic age acceleration.
Covariate InformationThis study categorized the covariates that may affected the relationship between chronic pain and epigenetic clocks into sociodemographic characteristics, drug uses, comorbidities, and lifestyle behaviors. Sociodemographic characteristics included age (years); sex (male and female); ethnicity (non-Hispanic Black, non-Hispanic White, Mexican American, and other races); education level (less than high school, high school graduate, some college, and college graduate); poverty income ratio (PIR; PIR < 1, and PIR ≥ 1); and marital status (married and other status). Drug uses included analgesic use and antidepressant use. Analgesic use was defined as taking prescription or over-the-counter pain relievers almost daily for a month, and antidepressant use was defined as taking at least one prescribed antidepressant medication in the past 30 days. Comorbidities encompassed hypertension, diabetes, heart disease, cancer, asthma, and arthritis. Hypertension, diabetes, cancer, asthma, and arthritis were characterized as conditions diagnosed by a physician. Heart disease was characterized by a diagnosis of congestive heart failure, coronary heart disease, angina, or myocardial infarction, any of which qualified as a kind. Lifestyle behaviors encompassed smoking status (never: < 100 cigarettes/life; former: ≥ 100 cigarettes/life and ceased smoking; current: ≥ 100 cigarettes/life and still smoking); alcohol consumption (non-drinker: < 12 alcoholic beverages/year; drinker: ≥ 12 alcoholic beverages/year); body mass index (BMI; underweight: < 18.5 kg/m², normal weight: 18.5–24.9 kg/m², overweight: 25.0–29.9 kg/m2, and obese: ≥ 30.0 kg/m2); and physical activity (PA). The PA level was assessed based on participants’ involvement in moderate and vigorous physical activities during leisure time over the preceding 30 days. It was divided into no PA, insufficient PA for those under 150 minutes per week, and sufficient PA for those over 150 minutes per week.29
Statistical AnalysesStatistical analyses were performed using R (version 4.3.3). Due to the intricate multistage probability sampling design of NHANES, all analyses utilized weights, strata, and primary sampling units as stipulated by the NHANES Analytic Guidelines. A small percentage of participants in this study displayed missing data for variables. Examining the absent data types with the R’s “mi” package (version 1.1) revealed a “Clustered by missingness” pattern, suggesting that the data deficiency was not wholly random. Therefore, we employed the Multiple Imputation by Chained Equations method to generate multiple imputations of the missing data across five separate datasets, with each interpolated dataset analyzed independently and consolidated the results.
Categorical variables were illustrated as weighted percentages, while continuous variables were presented as means with standard deviations. Categorical variables were compared using Chi-squared tests, while continuous variables were compared using the Complex Samples General Linear Model. Five weighted linear regression models were developed to evaluate the relationship between chronic pain and epigenetic clocks. Model 1 was the crude model. Model 2 incorporated adjustments for sociodemographic characteristics derived from Model 1. Model 3 further accounted for drug uses building upon Model 2. Model 4 enhanced Model 3 by incorporating adjustments for comorbidities. The final fully adjusted model (Model 5) enhanced Model 4 by incorporating lifestyle behavior variables.
To enhance the validity of the results, we employed the propensity score matching (PSM) method for sensitivity analysis. We fitted two PSM models, each utilizing chronic pain as the dependent variable but encompassing distinct predictor variables. PSM Model 1 encompassed all covariates, including sociodemographic characteristics, drug uses, comorbidities, and lifestyle behaviors as predictors, whereas PSM Model 2 excluded lifestyle behaviors as predictors. We calculated each participant’s propensity score using multivariable logistic regression and matched chronic and non-chronic pain participants at a 1:1 ratio using nearest neighbor matching with a caliper width of 0.2 standard deviations. Balance was assessed by the absolute standardized mean difference (ASMD), with an ASMD value less than 0.1 signifying adequate covariate balance.30 Simultaneously, we produced kernel density estimation to visualize the distribution of propensity scores before and after matching. Considering NHANES’s complex sample design, we created a new sampling weight by dividing each participant’s weight by the study’s average weight and incorporated it into the analysis. These PSM procedures were performed using R’s “MatchIt” package (version 4.5.5).
ResultsCharacteristics of the Study PopulationThe study encompassed 2,532 individuals, with 396 assigned to the chronic pain cohort and 2,136 to the non-pain cohort (Table 1). Notable differences in baseline characteristics between the two groups were evident, as indicated by their ASMD exceeding 0.1. The most pronounced discrepancies were in the prevalence of arthritis (ASMD = 0.629), followed by obesity (ASMD = 0.355), and the use of analgesics (ASMD = 0.269). Chronic pain sufferers tended to be younger, have a lower income ratio, exhibit higher rates of analgesic antidepressant usage, exhibit obesity, engage in minimal PA, smoke currently, and suffer from comorbidities associated with hypertension, cardiovascular disease, and arthritis (all P < 0.05).
Table 1 Baseline Characteristics of the Study Population by Chronic Pain Status (n = 2532)
Association Between Chronic Pain and Epigenetic Age AccelerationTable 2 presents a series of weighted linear regression models that explore the link between chronic pain and six epigenetic clocks across three generations. No significant differences were identified between chronic pain and the first-generation clocks (Horvath and Hannum) and the second-generation PhenoAge clock in any of the models. By contrast, individuals with chronic pain were observed to have significantly faster epigenetic age acceleration on GrimAgeAccel (β = 1.46, 95% CI: 0.65 to 2.27, P < 0.001), GrimAge2Accel (β = 1.67, 95% CI: 0.81 to 2.50, P < 0.001), and DunedinPoAm (β = 0.03, 95% CI: 0.01 to 0.04, P < 0.01) in the crude model compared to those without chronic pain. However, when incremental adjustments were made for sociodemographic characteristics, drug uses, and comorbidities, the strength of these associations weakened. In Model 4, the association was reduced to 1.15 years for GrimAgeAccel (95% CI: 0.27 to 2.03, P < 0.05), 1.24 years for GrimAge2Accel (95% CI: 0.30 to 2.19, P < 0.05), and the acceleration for DunedinPoAm became nearly negligible (95% CI: 0 to 0.04, P < 0.05). Finally, further adjustments for lifestyle behavior variables in Model 5 completely attenuated the observed associations across all epigenetic clocks.
Table 2 Weighted Linear Regression Analysis of the Association Between Chronic Pain and Epigenetic Age Acceleration (n = 2532)
Sensitivity AnalysesThe PSM Model 1 matched 389 pairs (totaling 778 individuals) between those with chronic pain and those without, while PSM Model 2 matched 395 pairs (totaling 790 individuals). Both PSM models achieved a balanced distribution across all covariates, as demonstrated by the kernel density plots in eFigure 1, which delineates the distribution of propensity scores before and after matching, alongside the sample characteristics and standardized mean differences detailed in eTable 1 and eTable 2.
Figure 2 presents the correlations between chronic pain and six epigenetic clocks across three generations after matching. In PSM Model 1, there was no significant correlation between chronic pain and any of the epigenetic clocks. However, in PSM Model 2, individuals experiencing chronic pain showed faster epigenetic age acceleration on GrimAgeAccel (β = 0.94, 95% CI: 0.05 to 1.83) and GrimAge2Accel (β = 1.14, 95% CI: 0.17 to 2.10). Notably, the association between chronic pain and DunedinPoAm did not reach statistical significance.
Figure 2 Forest plots of the association between chronic pain and epigenetic age acceleration after matching in different models.
Abbreviations: PSM, propensity score matching; CI, confidence interval; DunedinPoAm, Dunedin Pace of Aging methylation.
Notes: (A) PSM Model 1 (n = 778): employed chronic pain as the dependent variable and encompassed sociodemographic characteristics, drug uses, comorbidities, and lifestyle behaviors as predictors; (B) PSM Model 2 (n = 790): employed chronic pain as the dependent variable and excluded lifestyle behaviors as predictors. ΔHorvath: Horvath’s epigenetic age acceleration; ΔHannum: Hannum’s epigenetic age acceleration; ΔPhenoAge: PhenoAge acceleration; ΔGrimAge: GrimAge acceleration; ΔGrimAge2: GrimAge2 acceleration.
DiscussionThis study employed multivariable logistic regression combined with the PSM method to investigate the presence of epigenetic age acceleration in middle-aged and older Americans suffering from chronic pain between 1999 and 2002. Our findings yielded two significant insights. Firstly, no correlation was observed between chronic pain and epigenetic age acceleration after controlling for sociodemographic characteristics, drug uses, comorbidities, and lifestyle behaviors, with lifestyle behaviors identified as potentially modifiable risk factors. Secondly, among the various epigenetic clocks developed, the GrimAge2 clock demonstrated the highest sensitivity to epigenetic alterations linked to chronic pain.
The current study demonstrated notable differences between the chronic pain and non-chronic pain cohorts for various baseline variables. Patients with chronic pain were typically younger, possessed a lower socioeconomic status, were more likely to take analgesics and antidepressants, engaged in less healthy lifestyle behaviors, and were accompanied by related comorbidities. These findings were primarily congruent with prior epidemiological research on chronic pain, aside from the age covariate.31–34 Chronic pain is more prevalent in the elderly compared to younger individuals; however, this study focused on middle-aged and older participants aged 50 and above, rendering the age difference clinically insignificant. Epigenetic aging, like chronic pain, is a multifaceted process shaped by various internal and external factors. Research on chronic pain and epigenetic aging may uncover shared systemic mechanisms that could be targeted for intervention or treatment.
Consequently, the selection of covariates in the current study was undertaken more remarkably than in prior research, including the study by Edwin N. Aroke’s team,13 which adjusted solely for gender, race, and BMI, and the recent study by Yenisel Cruz-Almeida’s team,35 which overlooked comorbidities in the elderly population. Furthermore, in contrast to other research, the current study employed the PSM method combined with multivariable regression correction to mitigate selection bias from confounding factors. In observational studies, the PSM method is superior to traditional regression adjustment as it mitigates confounding by employing propensity scores independent of the study outcome. This distinction allows for a more precise separation between study design and analysis, thereby more accurately simulating a randomized controlled trial. At the same time, traditional regression adjustment may involve subjective decisions regarding the variable selection and model specification.36 In our study, sensitivity analysis enhanced the reliability of the findings, the attenuation of the association underscores the significance of lifestyle behaviors in the link between chronic pain and epigenetic age acceleration as potentially alterable risk factors.
Prior research has demonstrated a biological connection between chronic pain and epigenetic aging. Epigenetic alterations, especially DNAm, may influence injury and pain perception by modulating the expression of pro-injurious and anti-injurious genes within the injury pathway;37 simultaneously, accelerated DNAm reprogramming may contribute to the chronicity of pain.38 Additionally, persistent stress and neuroinflammation linked to chronic pain may promote DNA damage and cellular senescence accumulation, expediting epigenetic aging.39 Our research indicated that, alongside direct biological connections, confounding variables, particularly lifestyle behaviors, significantly influence the relationship between chronic pain and epigenetic aging. This discovery aligned with recent research indicating that epigenetic aging is a multifaceted biological phenomenon intricately linked to the subjective experience of pain and influenced by an amalgamation of biological, psychological, social, and environmental elements.40 Lifestyle behaviors offer a more accessible target for change among chronic pain patients than other confounders, particularly regarding unhealthy behaviors such as smoking, alcohol abuse, physical inactivity, and obesity.41 Consequently, this study provides vital guidance for developing personalized public health interventions to promote healthy aging among patients with chronic pain.
This study assessed the link between chronic pain and three generations of epigenetic clocks, our findings revealed that the second-generation clock, GrimAge, and its derivative, GrimAge2, exhibited heightened sensitivity to pain-related epigenetic alterations, supporting the findings of prior researchers.11,35 Developed using 1,030 distinct CpG sites near genes in various gene sets, including MHC class II genes, cytokine-mediated signaling pathways, and genes from the GO, KEGG, and PANTHER databases, the GrimAge-associated clock covers more CpG sites than other epigenetic clocks. The genes adjacent to these sites involve a wider range of biological processes and functions. Additionally, the GrimAge-associated clock also shows a stronger connection with mental mood fluctuations, such as autism42 and depression,43 suggesting its potential effectiveness in comprehending the epigenetic aging associated with chronic pain, which is influenced by a complex interplay of biological, psychological, social, and environmental factors. More importantly, our study demonstrated for the first time that GrimAge2 surpasses the original GrimAge in evaluating epigenetic alterations in chronic pain. GrimAge2 employs the identical 1030 CpG sites and, in addition to the original GrimAge’s incorporation of chronological age, female sex indicator, and eight DNAm biomarkers, add two novel biomarkers: high-sensitivity C-reactive protein and hemoglobin A1C. These additional biomarkers enhance the assessment of an individual’s biological age and health status, potentially leading to a more robust correlation with age-related phenotypes. Further research is needed to fully evaluate GrimAge2’s role in epigenetic changes associated with chronic pain.
Our work possesses several features. Firstly, in the study design, we meticulously examined the intricate relationship between chronic pain and epigenetic clocks, and the selection of covariates was rigorously evaluated, rendering it more complete than prior studies. For the first time, this work incorporated six epigenetic clocks spanning three generations, including the novel GrimAge2 clock, thereby enhancing the data available for elucidating the connection between chronic pain and epigenetic aging. We employed multivariable logistic regression combined with the PSM method, thereby augmenting the robustness and trustworthiness of our findings. Indeed, our study has several limitations. Like other cross-sectional studies, this research can only establish associations, not causations. The connection between chronic pain and epigenetic age acceleration is probably bidirectional, necessitating future longitudinal investigations. Additionally, despite the study accounting for biological, social, and environmental confounders, unrecognized or uncontrolled confounders influencing the outcomes may still exist, such as mental health issues. The 1999–2002 NHANES exclusively evaluated the mental health condition of adults aged 20 to 39, and the lack of mental health data may influence our assessment of the relationship between chronic pain and epigenetic clocks in the middle-aged and older demographic. In addition, the NHANES database’s limitations precluded the evaluation of more granular data concerning pain duration, pain intensity, and functional interference, thus constraining our capacity to investigate the dose-response relationship between chronic pain and accelerated epigenetic aging. Future investigations on the dose-response relationship are essential. Furthermore, for the third-generation epigenetic clock, the existing NHANES database provides data only on DunedinPoAm, limiting our ability to examine it with the more advanced Dunedin Pace of Aging Calculated from the Epigenome (DunedinPACE) clock. Subsequent research on chronic pain and DunedinPACE is essential.
ConclusionsIn middle-aged and older persons in the United States suffering from chronic pain, lifestyle behaviors serve as confounders in the pain-aging association and represent modifiable risk factors for epigenetic age acceleration. This offers essential direction for formulating public health policies to enhance healthy aging in individuals with chronic pain. Moreover, among the various epigenetic clocks developed, the GrimAge2 clock has the most sensitivity to epigenetic alterations linked to chronic pain, positioning it as a promising biomarker in the epigenetic investigation of pain.
Data Sharing StatementThe datasets generated and/or analyzed for this study can be found in the NHANES website (https://www.cdc.gov/nchs/nhanes/).
AcknowledgmentsThe authors express their gratitude to the National Health and Nutrition Examination Survey volunteers.
FundingThis research was supported by Nanping Science and Technology Innovation Joint Funding Project [grant number N2024LH022].
DisclosureThe authors report no conflicts of interest in this work.
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