SSR marker-based characterization of the timberline Himalayan Birch ( D. Don) for genetic diversity and population structure

Adhikari D, Reshi Z, Datta BK, Samant SS, Chettri A, Upadhaya K, Shah MA, Singh PP, Tiwary R, Majumdar K, Pradhan A. Inventory and characterization of new populations through ecological niche modelling improve threat assessment. Curr Sci. 2018;114:519–31.

Article  Google Scholar 

Bagnoli F, Vendramin GG, Buonamici A, et al. Is Cupressus sempervirens native in Italy? An answer from genetic and palaeobotanical data. Mol Ecol. 2009;18:2276–86.

Article  CAS  PubMed  Google Scholar 

Bhattacharjee SK. Hand book of medicinal plants. Jaipur: Pointer Publishers; 1998. p. 60.

Google Scholar 

Bobrowski M, Gerlitz L, Schickhoff U. Modelling the potential distribution of Betula utilis in the Himalaya. Global Ecol Conserv. 2017;11:69–83.

Article  Google Scholar 

Bona A, Brzeziński D, Jadwiszczak KA. Genetic diversity and fine-scale spatial genetic structure of the endangered shrub Birch (Betula humilis schrk.) populations in protected and unprotected areas. Diversity. 2022;14(8):684. https://doi.org/10.3390/d14080684.

Article  Google Scholar 

Cairns DM, Moen J. Herbivory influences treeline. J Ecol. 2004;92(6):1019–24.

Article  Google Scholar 

Chapuis MP, Estoup A. Microsatellite null alleles and estimation of population differentiation. Mol Biol Evol. 2007;24:621–31. https://doi.org/10.1093/molbev/msl191.

Article  CAS  PubMed  Google Scholar 

Dasila K, Rawal R, Barman T, et al. Influence of edaphic factors on distribution and condition of Himalayan silver Birch (Betula utilis D. Don) communities in the northWestern Indian Himalaya. J Mt Sci. 2024;21:590–6064.

Article  Google Scholar 

De Dato GD, Teani A, Mattioni C, Aravanopoulos F, Avramidou EV, Stojnic S, Ganopoulos I, Belletti P, Ducci F. Genetic analysis by nuSSR markers of Silver Birch (Betula pendula Roth) populations in their Southern European distribution range. Front Plant Sci. 2020;11:310. https://doi.org/10.3389/fpls.2020.00310.

Article  PubMed  PubMed Central  Google Scholar 

Dempster AP, Laird NM, Rubin DB. Maximum likelihood from incomplete data via the EM algorithm. J R Stat Soc Ser B Stat Method. 1977;39:1–38.

Article  Google Scholar 

DeSalle R, Amato G. The expansion of conservation genetics. Nat Rev Genet. 2004;5:702–12. https://doi.org/10.1038/nrg1425.

Article  CAS  PubMed  Google Scholar 

Devi K, Samant SS, Puri S, Lal M. Diversity, structure and regeneration pattern of tree communities in Kanawar Wildlife Sanctuary of Himachal Pradesh North Western Himalaya. India Ind J Ecol. 2019;46:94–103.

Google Scholar 

Doyle JJ, Doyle JL. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 1987;19:11–5.

Google Scholar 

Earl DA, VonHoldt BM. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour. 2012;4:359–61.

Article  Google Scholar 

Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14(8):2611–20.

Article  CAS  PubMed  Google Scholar 

Ferrer MM, Tapia-Gómez CA, Estrada-Medina H, Ruenes-Morales MD, Montañez-Escalante PI, Jiménez-Osornio JJ. Growing out of the tropical forests: gene flow of native Mesoamerican trees among forest and Mayan homegardens. Front Ecol Evol. 2021. https://doi.org/10.3389/fevo.2021.628765.

Article  Google Scholar 

Gamba D, Muchhala N. Global patterns of population genetic differentiation in seed plants. Mol Ecol. 2020. https://doi.org/10.1111/mec.15575.

Article  PubMed  Google Scholar 

Gaur RD. Flora of the district Garhwal North West Himalaya: with ethnobotanical notes. Transmedia; 1999.

Germino MJ. Plants in alpine environments. In: Monson R, editor. Ecology and the environment. New York: Springer; 2014. p. 1–30.

Google Scholar 

Ginwal HS, Rawat A, Shekhar C, et al. Population genetic structure of a timberline oak (Quercus semecarpifolia Sm.) of Western Himalaya and conservation implications. Conserv Genet. 2024;25:133–47.

Article  Google Scholar 

Greenbaum G, Templeton AR, Zarmi Y, Bar-David S. Allelic richness following population founding events: a stochastic modeling framework incorporating gene flow and genetic drift. PLoS ONE. 2014;9(12): e115203. https://doi.org/10.1371/journal.pone.0115203.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Guo JJ, Zeng J, Zhou SL, Zhao ZG. Isolation and characterization of 19 microsatellite markers in a tropical and warm subtropical Birch, Betula alnoides Buch.-Ham ex D. Don. Mol Ecol Resour. 2008;8(4):895–7.

Article  CAS  PubMed  Google Scholar 

Hamid M, Khuroo AA, Charles B, Ahmad R, Singh CP, Aravind NA. Impact of climate change on the distribution range and niche dynamics of Himalayan Birch, a typical treeline species in Himalaya. Biodivers Conserv. 2019;28:2345–70.

Article  Google Scholar 

Hamrick JL, Godt MJW, Sherman-Broyles SL. Factors influencing levels of genetic diversity in woody plant species. N For. 1992;6:95–124.

Google Scholar 

Hamrick JL, Godt MJW. Effects of life history traits on genetic diversity in plant species. Philos Trans R Soc B. 1996;351:1291–8.

Article  Google Scholar 

Hao W, Wang S, Liu H, Zhou B, Wang X, Jiang T. Development of SSR markers and genetic diversity in white Birch (Betula platyphylla). PLoS ONE. 2015;10(4): e0125235. https://doi.org/10.1371/journal.pone.0125235.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hartl DL, Clark AG. Principles of population genetics. 3rd ed. Sunderland: Sinauer Associates; 1997.

Google Scholar 

Holtmeier FK. Mountain timberlines: ecology, patchiness, and dynamics, vol. 36. Dordrecht: Springer; 2009.

Google Scholar 

Jadwiszczak KA, Drzymulska D, Banaszek A, Jadwiszczak P. Population history, genetic variation and conservation status of the endangered Birch species Betula nana L. Poland. Silva Fenn. 2012;46(4):465–77.

Article  Google Scholar 

Joshi HC, Samant SS. Change in structural and compositional diversity with altitude: a studyfrom Nanda Devi biosphere reserve (NDBR) West Himalaya India. Indian J For. 2014;37(2):121–36.

Google Scholar 

Kala CP. Ecology and conservation of alpine meadows in the valley of flowers national park, Garhwal Himalaya, Ph. D thesis, Forest Research Institute Deemed University. Dehradun; 1998.

Kala CP. Uses, population status and management of Betula utilis. Appl Ecol Environ Sci. 2018;6(3):79–83.

Google Scholar 

Kalia RK, Rai MK, Kalia S, Singh R, Dhawan AK. Microsatellite markers: an overview of the recent progress in plants. Euphytica. 2011;177(3):309–34. https://doi.org/10.1007/s10681-010-0286-9.

Article  CAS  Google Scholar 

Kalinowski ST. hp-rare 1.0: a computer program for performing rarefaction on measures of allelic richness. Mol Ecol Notes. 2005;5:187–9.

Article  CAS  Google Scholar 

Körner C. Treelines will be understood once the functional difference between a tree and a shrub is. Ambio. 2012;41(3):197–206.

Article  PubMed  PubMed Central  Google Scholar 

Kremer A, Ronce O, Robledo-Arnuncio JJ, Guillaume F, Bohrer G, Nathan R, Bridle JR, Gomulkiewicz R, Klein EK, Ritland K, Kuparinen A, Gerber S, Schueler S. Long-distance gene flow and adaptation of forest trees to rapid climate change. Ecol Lett. 2012;15(4):378–92.

Article  PubMed  PubMed Central  Google Scholar 

Lata R, Samant SS, Singh M. Review on regeneration status of Betula utilis D. Don: a critically endangered multipurpose timber line species in Indian Himalayan region. Environ Conserv J. 2021;22(3):155–67.

Google Scholar 

Lee MW, Lee JW, Kim SC, Ahn JY. Development of microsatellite markers in Betula costata (Betulaceae) by next-generation sequencing and cross-species transferability test. Mol Biol Rep. 2020;47(8):6407–15.

Article  CAS  PubMed  Google Scholar 

Li Y, Xue Z, Liu T, Song J, Yuan Y, Xu L, Zhang Z. Genetic diversity of dominant species Betula pendula in river valley forests in the Irtysh river basin and sustainable conservation measures for the future. Sustainability. 2024;16(8):3217. https://doi.org/10.3390/su16083217.

Article  Google Scholar 

Liu K, Muse SV. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics. 2005;21:2128–9. https://doi.org/10.1093/bioinformatics/bti282.

Article  CAS  PubMed  Google Scholar 

López-Cortegano E, Pouso R, Labrador A, et al. Optimal management of genetic diversity in subdivided populations. Front Genet. 2019;10:843. https://doi.org/10.3389/fgene.2019.00843.

Article  PubMed 

Comments (0)

No login
gif