Abady S, Shimelis H, Janila P, Yaduru S, Shayanowako AI, Deshmukh D, Chaudhari S, Manohar SS. Assessment of the genetic diversity and population structure of groundnut germplasm collections using phenotypic traits and SNP markers: Implications for drought tolerance breeding. PLoS ONE. 2021;17(16): e0259883.
Ahmad A, Aslam MN, Qurashi F, Ashraf W, Raheel M, Shakeel Q, Maqsood A, Saleem K. 2021. Molecular diversity and phylogenetic reconstruction of Pepper mild mottle virus isolates from Pakistan. Asian Journal of Agriculture and Biology. https://doi.org/10.35495/ajab.2020.09.464.
Alemu A, Feyissa T, Letta T, Abeyo B. Genetic diversity and population structure analysis based on the high density SNP markers in Ethiopian durum wheat (Triticum turgidum ssp. durum). BMC genetics. 2020;21:1–2.
Arshad M, Ilyas MK, Khan MA. Genetic divergence and path coefficient analysis for seed yield traits in sunflower (Helianthus annuus L.) hybrids. Pak J Bot. 2007;39:2009–15.
Banla EM, Dzidzienyo DK, Diangar MM, Melomey LD, Offei SK, Tongoona P, Desmae H. Molecular and phenotypic diversity of groundnut (Arachis hypogaea L.) cultivars in Togo. Physiol Mol Biol Plants. 2020;26:1489–04.
Article CAS PubMed PubMed Central Google Scholar
Benchasri S, Simla S, Harakotr B. AJAB Asian J Agric & Biol. 2020;8:480–90.
Darvishzadeh R, Azizi M, Hatami-Maleki H, Bernousi I, Mandoulakani BA, Jafari M, Sarrafi A. Molecular characterization and similarity relationships among sunflower (Helianthus annuus L.) inbred lines using some mapped simple sequence repeats. African J Biotechnol. 2010;9:7280–8.
Daudi H, Shimelis H, Mathew I, Oteng-Frimpong R, Ojiewo C, Varshney RK. Genetic diversity and population structure of groundnut (Arachis hypogaea L.) accessions using phenotypic traits and SSR markers: implications for rust resistance breeding. Genetic Resour Crop Evol. 2021;68:581–04.
Doyle JJ, Doyle JL. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical bulletin. 1987;19:11–5.
Dreisigacker S, Zhang P, Warburton ML, Skovmand B, Hoisington D, Melchinger AE. Genetic diversity among and within CIMMYT wheat landrace accessions investigated with SSRs and implications for plant genetic resources management. Crop Sci. 2005;45:653–61. https://doi.org/10.2135/cropsci2005.0653.
Dudhe MY, Jadhav MV, Sujatha M, Meena HP, Rajguru AB, Gahukar SJ, Ghodke MK. WAASB-based stability analysis and validation of sources resistant to Plasmopara halstedii race-100 from the sunflower working germplasm for the semiarid regions of India. Genet Resour Crop Evol. 2024;71:1435–52. https://doi.org/10.1007/s10722-023-01698-2.
Dudhe MY, Mulpuri S, Meena HP, Ajjanavara RR, Kodeboyina VS, Adala VR. Genetic variability, diversity and identification of trait-specific accessions from the conserved sunflower germplasm for exploitation in the breeding programme. Agricultural Research. 2020;9:9–22. https://doi.org/10.1007/s40003-019-00406-w.
Dwivedi SL, Crouch JH, Nigam SN, Ferguson ME, Paterson AH. Molecular breeding of groundnut for enhanced productivity and food security in the semi-arid tropics: opportunities and challenges. Adv Agron. 2003;80:153–21. https://doi.org/10.1016/S0065-2113(03)80004-4.
Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14:2611–20. https://doi.org/10.1111/j.1365-294X.2005.02553.x.
Article CAS PubMed Google Scholar
Filippi CV, Aguirre N, Rivas JG, Zubrzycki J, Puebla A, Cordes D, Lia VV. Population structure and genetic diversity characterization of a sunflower association mapping population using SSR and SNP markers. BMC Plant Biol. 2015;15:1–12. https://doi.org/10.1186/s12870-014-0410-4.
Gogoi A, Munda S, Paw M, Begum T, Siddiqui MH, Gaafar ARZ, Lal M. Molecular genetic divergence analysis amongst high curcumin lines of Golden Crop (Curcuma longa L.) using SSR marker and use in trait-specific breeding. Scientific Reports. 2023;13:19690.
Article CAS PubMed PubMed Central Google Scholar
Guan R, Chang R, Li Y, Wang L, Liu Z, Qiu L. Genetic diversity comparison between Chinese and Japanese soybeans (Glycine max (L.) Merr.) revealed by nuclear SSRs. Genetic Resour Crop Evol. 2010;57:229–42.
Ibrar D, Khan S, Mahmood T, Bakhsh A, Aziz I, Rais A, Hasnain Z. Molecular markers-based DNA fingerprinting coupled with morphological diversity analysis for prediction of heterotic grouping in sunflower (Helianthus annuus L.). Front Plant Sci. 2022;13:916845.
Article PubMed PubMed Central Google Scholar
Ibrar D, Khan S, Raza M, Nawaz M, Hasnain Z, Kashif M, Gaafar ARZ. Application of machine learning for identification of heterotic groups in sunflower through combined approach of phenotyping, genotyping and protein profiling. Sci Rep. 2024;14:7333. https://doi.org/10.1038/s41598-024-58049-z.
Article CAS PubMed PubMed Central Google Scholar
Ikram A, Aslam HMU, Atiq M, Amrao L, Ali S, Khan NA. Screening of resistant germplasm against powdery mildew of pea and its management through nutrients and plant activators. Asian J Agric Biol. 2020;8:85–91. https://doi.org/10.35495/ajab.2019.10.441.
Indiastat: 2024
Iqbal A, Sadaqat HA, Khan AS, Amjad M. Identification of sunflower (Helianthus annuus, Asteraceae) hybrids using simple-sequence repeat markers. Genet Mol Res. 2011;10:102–6.
Article CAS PubMed Google Scholar
Kottapalli P, Upadhyaya HD, Kottapalli KR, Payton P, Dwivedi S, Burow M, Puppala N. Population structure and diversity in Valencia peanut germplasm collection. Crop Sci. 2011;51:1089–100.
Krapovickas A, Gregory WC, Williams DE, Simpson CE. Taxonomy of the genus Arachis (Leguminosae). Bonplandia. 2007;16:7–205. Bonplandia https://www.jstor.org/stable/i40090465
Kumar S, Susmita C, Agarwal DK, Pal G, Rai AK, Simal-Gandara J. Assessment of genetic purity in rice using polymorphic SSR markers and its economic analysis with grow-out-test. Food Anal Methods. 2021;14:856–64. https://doi.org/10.1007/s12161-020-01927-9.
Lavudya S, Thiyagarajan K, Ramasamy S, Sankarasubramanian H, Muniyandi S, Bellie A, Dhanapal S. Assessing population structure and morpho-molecular characterization of sunflower (Helianthus annuus L.) for elite germplasm identification. PeerJ. 2024;12:e18205.
Article PubMed PubMed Central Google Scholar
Li YL, Liu JX. StructureSelector: a web-based software to select and visualize the optimal number of clusters using multiple methods. Mol Ecol Resour. 2018;18:176–7. https://doi.org/10.1111/1755-0998.12719.
Minnaar-Ontong A, Gerrano AS, Labuschagne MT. Assessment of genetic diversity and structure of Bambara groundnut [Vigna subterranea (L.) verdc.] landraces in South Africa. Sci Rep. 2021;11:7408.
Article CAS PubMed PubMed Central Google Scholar
Molosiwa OO, Aliyu S, Stadler F, Mayes K, Massawe F, Kilian A, Mayes S. SSR marker development, genetic diversity and population structure analysis of Bambara groundnut [Vigna subterranea (L.) Verdc.] landraces. Genetic Resour Crop Evol. 2015;62:1225–43.
Ozkan G, Haliloğlu K, Turkoglu A, Ozturk H, Elkoca E, Poczai P. Determining genetic diversity and population structure of common bean (Phaseolus vulgaris L.) landraces from Turkiye using SSR markers. Genes. 2022;13:1410.
Article PubMed PubMed Central Google Scholar
Perrier X, Jacquemoud-Collet J. DARwin software: dissimilarity analysis and representation for windows 2006. Available at http://darwin.cirad.fr/ darwin (accessed on 1 March 2013).
Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed. 1996;2:225–38. https://doi.org/10.1007/BF00564200.
Pramanik A, Tiwari S, Tomar RS, Tripathi MK, Singh AK. Molecular characterization of groundnut (Arachis hypogaea L.) germplasm lines and varietal set for yield and yield attributing traits. Indian J Genetics Plant Breed. 2019;79:56–65.
Pritchard JK, Stephens M, Rosenberg NA, Donnelly P. Association mapping in structured populations. The Am J Human Genetics. 2000;67:170–81. https://doi.org/10.1086/302959.
Puechmaille SJ. The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem. Mol Ecol Resour. 2016;16:608–27. https://doi.org/10.1111/1755-0998.12512.
Ramanaiah C, Kadirvel P. Genetic diversity analysis in sunflower (Helianthus annuus L.) restorer lines using SSR markers. J Oilseeds Res. 2021;38:244–50.
Rani R, Raza G, Tung MH, Rizwan M, Ashfaq H, Shimelis H, Razzaq MK, Arif M. Genetic diversity and population structure analysis in cultivated soybean (Glycine max [L.] Merr.) using SSR and EST-SSR markers. PLOS ONE. 2023;18:e0286099.
Comments (0)