Disease-responsive novel miRNAs regulate anthracnose disease progression in bullet cultivar of chilli ( L.)

Afzal AJ, Wood AJ, Lightfoot DA. Plant receptor-like serine threonine kinases: roles in signaling and plant defense. Mol Plant Microbe Interact. 2008;21(5):507–17. https://doi.org/10.1094/MPMI-21-5-0507.

Article  CAS  PubMed  Google Scholar 

Andrés-León E, Núñez-Torres R, Rojas A. miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis. Sci Rep. 2016. https://doi.org/10.1038/srep25749.

Article  PubMed  PubMed Central  Google Scholar 

Apostolova E, Hadjieva N, Ivanova DP, Yahubyan G, Baev V, Gozmanova M. MicroRNA expression dynamics reshape the cultivar-specific response of pepper (Capsicum annuum L.) to potato spindle tuber viroid (PSTVd) infection. Sci Hortic. 2021. https://doi.org/10.1016/j.scienta.2020.109845.

Article  Google Scholar 

Bijali J, Halder T, Acharya K. Elucidation of the biochemical and molecular basis of the differential disease expression in two cultivars of chilli (Capsicum annuum) in response to Colletotrichum capsici infection. Acta Physiol Plant. 2021;43:155. https://doi.org/10.1007/s11738-021-03334-x.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Brown J, Pirrung M, McCue LA. FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. Bioinformatics. 2017;33(19):3137–9. https://doi.org/10.1093/bioinformatics/btx373.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dai X, Zhuang Z, Zhao PX. psRNATarget: a plant small RNA target analysis server release. Nucleic Acids Res. 2017. https://doi.org/10.1093/nar/gky316.

Article  PubMed  PubMed Central  Google Scholar 

FAOSTAT. 2012; Food and Agriculture Organization of the United Nations.http://faostat.fao.org/site/567/default.aspx#ancor

Ferniah RS, Kasiamdari RS, Priyatmojo A, Daryono BS. Resistance response of chilli (Capsicum annuum L.) F1 to Fusarium oxysporum involves expression of the CaChi2 gene. Trop Life Sci Res. 2018;29(2):29–37. https://doi.org/10.21315/tlsr2018.29.2.3.

Article  PubMed  PubMed Central  Google Scholar 

Ge SX, Jung D, Yao R. Shiny GO:a graphical gene-set enrichment tool for animals and plants. Bioinformatics. 2020;36(8):2628–9. https://doi.org/10.1093/bioinformatics/btz931.

Article  CAS  PubMed  Google Scholar 

Heller J, Tudzynski P. Reactive oxygen species in phytopathogenic fungi: signalling, development, and disease. Annu Rev Phytopathol. 2011;49(1):369–90. https://doi.org/10.1146/annurev-phyto-072910-095355.

Article  CAS  PubMed  Google Scholar 

Isam F, Bjorn V, Ralf R, Wolfgang RH, Wolfgang F. Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. Plant Biol. 2007;7:13.

Google Scholar 

Jones-Rhoades MW, Bartel DP, Bartel B. MicroRNAs and their regulatory roles in plants. Annu Rev Plant Biol. 2006;57:19–53.

Article  CAS  PubMed  Google Scholar 

Kumar K, Mandal SN, Neelam K, de Los Reyes BG. MicroRNA-mediated host defense mechanisms against pathogens and herbivores in rice: balancing gains from genetic resistance with trade-offs to productivity potential. BMC Plant Biol. 2022;22(1):351. https://doi.org/10.1186/s12870-022-03723-5.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta DeltaC(T)) Method. Methods. 2001;25(4):402–8. https://doi.org/10.1006/meth.2001.1262.

Article  CAS  PubMed  Google Scholar 

Li Y, Wang N, Guo J, Zhou X, Bai X, Azeem M, Zhu L, Chen L, Chu M, Wang H, Cheng W. Integrative transcriptome analysis of mRNA and miRNA in pepper’s response to Phytophthora capsici infection. Biol (Basel). 2024;13(3):186. https://doi.org/10.3390/biology13030186.

Article  CAS  Google Scholar 

Monaghan J, Zipfel C. Plant pattern recognition receptor complexes at the plasma membrane. Curr Opin Plant Biol. 2012;15(4):349–57. https://doi.org/10.1016/j.pbi.2012.05.006.

Article  CAS  PubMed  Google Scholar 

Meyers BC, et al. Criteria for annotation of plant MicroRNAs. Plant Cell. 2008;20:3186–90.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mishra R, Mohanty JN, Chand SK, Joshi RK. Can-miRn37a mediated suppression of ethylene response factors enhances the resistance of chilli against anthracnose pathogen Colletotrichum truncatum L. Plant Sci. 2018;267:135–47. https://doi.org/10.1016/j.plantsci.2017.12.001.

Article  CAS  PubMed  Google Scholar 

Natarajan B, Kalsi HS, Godbole P, Malankar N, Thiagarayaselvam A, Siddappa S, Thulasiram HV, Chakrabarti SK, Banerjee AK. MiRNA160 is associated with local defense and systemic acquired resistance against Phytophthora infestans infection in potato. J Exp Bot. 2018. https://doi.org/10.1093/jxb/ery025.

Article  PubMed  PubMed Central  Google Scholar 

Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, Estelle M, Voinnet O, Jones JDG. A plant miRNA contributes to anti-bacterial resistance by repressing auxin-signalling. Science. 2006;312:436.

Article  CAS  PubMed  Google Scholar 

Saxena A, Mishra S, Ray S, Raghuwanshi R, Singh H. Differential reprogramming of defense network in Capsicum annum L. plants against Colletotrichum truncatum infection by phyllospheric and rhizospheric Trichoderma strains. J Plant Growth Regul. 2019. https://doi.org/10.1007/s00344-019-10017-y.

Article  Google Scholar 

Sharma G, Pinnaka AK, Shenoy BD. Infra-specific diversity of Colletotrichum truncatu associated with chilli anthracnose in India based on microsatellite marker analysis. Arch Phytopathol Plant Prot. 2014;47(20):2509–23. https://doi.org/10.1080/03235408.2014.880577.

Article  Google Scholar 

Supek F, Bošnjak M, Škunca N, Šmuc T. REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS ONE. 2011;6(7): e21800. https://doi.org/10.1371/journal.pone.0021800.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Than PP, Jeewon R, Hyde KD, Pongsupasamit S, Mongkolporn O, Taylor PWJ. Characterization and pathogenicity of Colletotrichum species associated with anthracnose on chilli (Capsicum spp) in Thailand. Plant Pathol. 2008;57:562–72. https://doi.org/10.1111/j.1365-3059.2007.01782.x.

Article  Google Scholar 

Yang Y, Zheng J, Liang Y, Wang X, Li K, Chen L, Aduragbemi A, Han Y, Sun Z, Li H, et al. Natural Resistance-associated macrophage protein (Nramp) family in foxtail millet (Setariaitalica): characterization, expression analysis and relationship with metal content under Cd stress. Agronomy. 2023;13(8):2000. https://doi.org/10.3390/agronomy13082000.

Article  CAS  Google Scholar 

Yang Z, Yu Y, Yao L, et al. DetoxiProt: an integrated database for detoxification proteins. BMC Genom. 2011. https://doi.org/10.1186/1471-2164-12-S3-S2.

Article  Google Scholar 

Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003;13:3406–15.

Article  Google Scholar 

Comments (0)

No login
gif