Andersen KG, Nissen JK, Betz AG (2012) Comparative Genomics Reveals Key Gain-of-Function Events in Foxp3 during Regulatory T Cell Evolution. Front Immunol 3:113. https://doi.org/10.3389/fimmu.2012.00113

Article  PubMed  PubMed Central  CAS  Google Scholar 

Bartlett P, Ward T, Brue D et al (2021) Ranaviruses in North America: A Brief Review in Wild Herpetofauna. J North Am Herpetol 2021. https://doi.org/10.17161/jnah.v2021i2.15747

Beissert S, Schwarz A, Schwarz T (2006) Regulatory T cells. J Invest Dermatol 126:15–24. https://doi.org/10.1038/sj.jid.5700004

Article  PubMed  CAS  Google Scholar 

Bennett CL, Christie J, Ramsdell F et al (2001) (2001) The immune dysregulation, polyendocrinopathy, enteropathy, X-linked syndrome (IPEX) is caused by mutations of FOXP3. Nat Genet 271(27):20–21. https://doi.org/10.1038/83713

Article  CAS  Google Scholar 

Burkhardt NB, Elleder D, Schusser B et al (2022) The Discovery of Chicken Foxp3 Demands Redefinition of Avian Regulatory T Cells. J Immunol 208:1128–1138. https://doi.org/10.4049/JIMMUNOL.2000301

Article  PubMed  CAS  Google Scholar 

Cai Q, Qian X, Lang Y et al (2013) Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude. Genome Biol 14:1–12. https://doi.org/10.1186/GB-2013-14-3-R29/TABLES/3

Article  Google Scholar 

Clark R, Kupper T (2005) Old Meets New: The Interaction Between Innate and Adaptive Immunity. J Invest Dermatol 125:629–637. https://doi.org/10.1111/j.0022-202X.2005.23856.x

Article  PubMed  CAS  Google Scholar 

Cunningham AA (2018) Infectious disease threats to amphibian conservation. In: Glasg. Nat. https://www.glasgownaturalhistory.org.uk/gn27_supp.html. Accessed 25 Jan 2024

Deng G, Song X, Greene MI (2020) FoxP3 in Treg cell biology: a molecular and structural perspective. Clin Exp Immunol 199:255–262. https://doi.org/10.1111/CEI.13357

Article  PubMed  CAS  Google Scholar 

Densmore CL, Green DE (2007) Diseases of Amphibians. ILAR J 48:235–254. https://doi.org/10.1093/ilar.48.3.235

Article  PubMed  CAS  Google Scholar 

Denyer MP, Pinheiro DY, Garden OA, Shepherd AJ (2016) Missed, Not Missing: Phylogenomic Evidence for the Existence of Avian FoxP3. PLoS ONE 11:e0150988. https://doi.org/10.1371/JOURNAL.PONE.0150988

Article  PubMed  PubMed Central  Google Scholar 

Fites JS, Ramsey JP, Holden WM et al (2013) The invasive chytrid fungus of amphibians paralyzes lymphocyte responses. Science 342:366–369. https://doi.org/10.1126/science.1243316

Article  PubMed  PubMed Central  CAS  Google Scholar 

Flajnik MF (2018) A cold-blooded view of adaptive immunity. Nat Rev Immunol 18:438–453. https://doi.org/10.1038/s41577-018-0003-9

Article  PubMed  PubMed Central  CAS  Google Scholar 

Fontenot JD, Gavin MA, Rudensky AY (2003) Foxp3 programs the development and function of CD4+CD25+ regulatory T cells. Nat Immunol 44(4):330–336. https://doi.org/10.1038/ni904

Article  CAS  Google Scholar 

Fukazawa T, Naora Y, Kunieda T, Kubo T (2009) Suppression of the immune response potentiates tadpole tail regeneration during the refractory period. Development 136:2323–2327. https://doi.org/10.1242/dev.033985

Article  PubMed  CAS  Google Scholar 

Grogan LF, Robert J, Berger L et al (2018) Review of the amphibian immune response to chytridiomycosis, and future directions. Front Immunol 9:2536. https://doi.org/10.3389/fimmu.2018.02536

Article  PubMed  PubMed Central  CAS  Google Scholar 

Guindon S, Dufayard J-F, Lefort V et al (2010) New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Syst Biol 59:307–321. https://doi.org/10.1093/sysbio/syq010

Article  PubMed  CAS  Google Scholar 

Hime PM, Lemmon AR, Moriarty Lemmon EC et al (2021) Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life. Syst Biol 70:49–66. https://doi.org/10.1093/SYSBIO/SYAA034

Article  PubMed  CAS  Google Scholar 

Hossainey MRH, Yaparla A, Hauser KA et al (2021) The roles of amphibian (Xenopus laevis) macrophages during chronic frog virus 3 infections. Viruses 13:2299. https://doi.org/10.3390/V13112299/S1

Article  PubMed  PubMed Central  CAS  Google Scholar 

Joven A, Elewa A, Simon A (2019) Model systems for regeneration: salamanders. Development 146:167700. https://doi.org/10.1242/dev.167700

Article  CAS  Google Scholar 

Kanehisa M, Furumichi M, Sato Y et al (2023) KEGG for taxonomy-based analysis of pathways and genomes. Nucleic Acids Res 51:D587–D592. https://doi.org/10.1093/nar/gkac963

Article  PubMed  CAS  Google Scholar 

Kasheta M, Painter CA, Moore FE et al (2017) Identification and characterization of T reg-like cells in zebrafish. J Exp Med 214:3519–3530. https://doi.org/10.1084/jem.20162084

Article  PubMed  PubMed Central  CAS  Google Scholar 

Knyshov A, Gordon ERL, Weirauch C (2021) New alignment-based sequence extraction software (ALiBaSeq) and its utility for deep level phylogenetics. PeerJ 9:e11019. https://doi.org/10.7717/peerj.11019

Article  PubMed  PubMed Central  Google Scholar 

Kopec AL, Michaud ZE, Maniero GD (2020) The Role Of IL-16 as a lymphocyte attractant appears to be conserved through phylogeny: preliminary evidence that recombinant human IL-16 preferentially attracts regulatory lymphocytes in the amphibian, Xenopus laevis. Arch Autoimmune Dis 1:44–48

Google Scholar 

Kosakovsky Pond SL, Frost SDW (2005a) Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection. Mol Biol Evol 22:1208–1222. https://doi.org/10.1093/molbev/msi105

Article  PubMed  CAS  Google Scholar 

Kosakovsky Pond SL, Frost SDW (2005b) Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21:2531–2533. https://doi.org/10.1093/BIOINFORMATICS/BTI320

Article  Google Scholar 

Larsson A (2014) AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30:3276–3278. https://doi.org/10.1093/bioinformatics/btu531

Article  PubMed  PubMed Central  CAS  Google Scholar 

Lefort V, Longueville J-E, Gascuel O (2017) SMS: Smart Model Selection in PhyML. Mol Biol Evol 34:2422–2424. https://doi.org/10.1093/molbev/msx149

Article  PubMed  PubMed Central  CAS  Google Scholar 

Litman GW, Rast JP, Fugmann SD (2010) The origins of vertebrate adaptive immunity. Nat Rev Immunol 108(10):543–553. https://doi.org/10.1038/nri2807

Article  CAS  Google Scholar 

Ludwiczak J, Winski A, Szczepaniak K et al (2019) DeepCoil—a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinformatics 35:2790–2795. https://doi.org/10.1093/bioinformatics/bty1062

Article  PubMed  CAS  Google Scholar 

Lynn WG (1961) Types of Amphibian Metamorphosis. Am Zool 1:151–161

Article  Google Scholar 

Pond SLK, Frost SDW, Muse SV (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21:676–679. https://doi.org/10.1093/bioinformatics/bti079

Article  PubMed