Akram H, Sotiropoulos SN, Jbabdi S, Georgiev D, Mahlknecht P, Hyam J, Foltynie T, Limousin P, De Vita E, Jahanshahi M, Hariz M, Ashburner J, Behrens T, Zrinzo L (2017) Subthalamic deep brain stimulation sweet spots and hyperdirect cortical connectivity in parkinson’s disease. NeuroImage 158:332–345
Ali T, Lv J, Kassem M, D’Souza A, O’Callaghan C, Dalton M, Calamante F (2024) In-vivo parcellation of human subcortex by multi-modal MRI. In Research Square. https://doi.org/10.21203/rs.3.rs-4203104/v1
Amaral RSC, Park MTM, Devenyi GA, Lynn V, Pipitone J, Winterburn J, Chavez S, Schira M, Lobaugh NJ, Voineskos AN, Pruessner JC, Chakravarty MM (2018) Manual segmentation of the fornix, fimbria, and alveus on high-resolution 3T MRI: application via fully-automated mapping of the human memory circuit white and grey matter in healthy and pathological aging. NeuroImage 170:132–150
Archer DB, Vaillancourt DE, Coombes SA (2018) A template and probabilistic atlas of the human sensorimotor tracts using diffusion MRI. Cerebral Cortex (New York, N.Y.: 1991), 28(5), 1685–1699
Arrigoni F, Peruzzo D, Mandelstam S, Amorosino G, Redaelli D, Romaniello R, Leventer R, Borgatti R, Seal M, Yang JY-M (2020) Characterizing white matter tract organization in polymicrogyria and lissencephaly: A multifiber diffusion MRI modeling and tractography study. AJNR Am J Neuroradiol 41(8):1495–1502
PubMed PubMed Central CAS Google Scholar
Avecillas-Chasin JM, Alonso-Frech F, Nombela C, Villanueva C, Barcia JA (2019) Stimulation of the tractography-defined subthalamic nucleus regions correlates with clinical outcomes. Neurosurgery 85(2):E294–E303
Basser PJ, Mattiello J, LeBihan D (1994a) Estimation of the effective self-diffusion tensor from the NMR spin echo. J Magn Reson B 103(3):247–254
Basser PJ, Mattiello J, LeBihan D (1994b) MR diffusion tensor spectroscopy and imaging. Biophys J 66(1):259–267
PubMed PubMed Central CAS Google Scholar
Bassett DS, Sporns O (2017) Network neuroscience. Nat Neurosci 20(3):353–364
PubMed PubMed Central CAS Google Scholar
Cai LY, Lee HH, Johnson GW, Newlin NR, Ramadass K, Kim ME, Archer DB, Hohman TJ, Jefferson AL, Begnoche JP, Boyd BD, Taylor WD, Morgan VL, Englot DJ, Nath V, Chotai S, Barquero L, D’Archangel M, Cutting LE, Landman BA (2024) Tractography from T1-weighted MRI: empirically exploring the clinical viability of streamline propagation without diffusion MRI. Imaging Neurosci 2:1–20
Catani M, de Thiebaut M (2008) A diffusion tensor imaging tractography atlas for virtual in vivo dissections. Cortex; a journal devoted to the study of the nervous system and behavior. 44(8):1105–1132
Catani M, de Thiebaut M (2012) Atlas of human brain connections (all tracts). Atlas of human brain connections. Oxford University Press, pp 75–238
Chenot Q, Tzourio-Mazoyer N, Rheault F, Descoteaux M, Crivello F, Zago L, Mellet E, Jobard G, Joliot M, Mazoyer B & Others. (n.d.). A probabilistic atlas of the human pyramidal tract. https://scholar.archive.org/work/gmiszvvjbnduxpt7jtmmxrfrau/access/wayback/https://www.biorxiv.org/content/biorxiv/early/2018/01/22/251108.full.pdf
Dalton MA, D’Souza A, Lv J, Calamante F (2022) New insights into anatomical connectivity along the anterior-posterior axis of the human hippocampus using in vivo quantitative fibre tracking. eLife 11. https://doi.org/10.7554/eLife.76143
Demirtaş M, Burt JB, Helmer M, Ji JL, Adkinson BD, Glasser MF, Van Essen DC, Sotiropoulos SN, Anticevic A, Murray JD (2019) Hierarchical heterogeneity across human cortex shapes large-scale neural dynamics. Neuron 101(6):1181–1194e13
PubMed PubMed Central Google Scholar
Desikan RS, Ségonne F, Fischl B, Quinn BT, Dickerson BC, Blacker D, Buckner RL, Dale AM, Maguire RP, Hyman BT, Albert MS, Killiany RJ (2006) An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. NeuroImage 31(3):968–980
Eickhoff SB, Stephan KE, Mohlberg H, Grefkes C, Fink GR, Amunts K, Zilles K (2005) A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data. NeuroImage 25(4):1325–1335
Eickhoff SB, Paus T, Caspers S, Grosbras M-H, Evans AC, Zilles K, Amunts K (2007) Assignment of functional activations to probabilistic cytoarchitectonic areas revisited. NeuroImage 36(3):511–521
Elias GJB, Germann J, Joel SE, Li N, Horn A, Boutet A, Lozano AM (2024) A large normative connectome for exploring the tractographic correlates of focal brain interventions. Sci Data 11(1):353
PubMed PubMed Central Google Scholar
Elliott LT, Sharp K, Alfaro-Almagro F, Shi S, Miller KL, Douaud G, Marchini J, Smith SM (2018) Genome-wide association studies of brain imaging phenotypes in UK biobank. Nature 562(7726):210–216
PubMed PubMed Central CAS Google Scholar
Essayed WI, Zhang F, Unadkat P, Cosgrove GR, Golby AJ, O’Donnell LJ (2017) White matter tractography for neurosurgical planning: A topography-based review of the current state of the Art. NeuroImage Clin 15:659–672
PubMed PubMed Central Google Scholar
Figley TD, Moghadam M, Bhullar B, Kornelsen N, Courtney J, S. M., Figley CR (2017) Probabilistic white matter atlases of human auditory, basal ganglia, language, precuneus, sensorimotor, visual and visuospatial networks. Front Hum Neurosci 11:306
PubMed PubMed Central Google Scholar
Forkel SJ, Friedrich P, Thiebaut de Schotten M, Howells H (2022) White matter variability, cognition, and disorders: a systematic review. Brain Struct Function 227(2):529–544
Forstmann BU, Anwander A, Schäfer A, Neumann J, Brown S, Wagenmakers E-J, Bogacz R, Turner R (2010) Cortico-striatal connections predict control over speed and accuracy in perceptual decision making. Proc Natl Acad Sci USA 107(36):15916–15920
PubMed PubMed Central CAS Google Scholar
Garyfallidis E, Côté M-A, Rheault F, Sidhu J, Hau J, Petit L, Fortin D, Cunanne S, Descoteaux M (2018) Recognition of white matter bundles using local and global streamline-based registration and clustering. NeuroImage 170:283–295
Glasser MF, Coalson TS, Robinson EC, Hacker CD, Harwell J, Yacoub E, Ugurbil K, Andersson J, Beckmann CF, Jenkinson M, Smith SM, Van Essen DC (2016) A multi-modal parcellation of human cerebral cortex. Nature 536(7615):171–178
PubMed PubMed Central CAS Google Scholar
Guevara P, Poupon C, Rivière D, Cointepas Y, Descoteaux M, Thirion B, Mangin J-F (2011) Robust clustering of massive tractography datasets. NeuroImage 54(3):1975–1993
Guevara M, Guevara P, Román C, Mangin J-F (2020) Superficial white matter: A review on the dMRI analysis methods and applications. NeuroImage 212:116673
Hansen CB, Yang Q, Lyu I, Rheault F, Kerley C, Chandio BQ, Fadnavis S, Williams O, Shafer AT, Resnick SM, Zald DH, Cutting LE, Taylor WD, Boyd B, Garyfallidis E, Anderson AW, Descoteaux M, Landman BA, Schilling KG (2021) Pandora: 4-D white matter bundle population-based atlases derived from diffusion MRI fiber tractography. Neuroinformatics 19(3):447–460
Hibar DP, Initiative TAlzheimer’sDN, Stein JL, Renteria ME, Arias-Vasquez A, Desrivières S, Jahanshad N, Toro R, Wittfeld K, Abramovic L, Andersson M, Aribisala BS, Armstrong NJ, Bernard M, Bohlken MM, Boks MP, Bralten J, Brown AA, Chakravarty M (2015) M.,… SYS. Common genetic variants influence human subcortical brain structures. Nature, 520(7546), 224–229
Horn A, Li N, Dembek TA, Kappel A, Boulay C, Ewert S, Tietze A, Husch A, Perera T, Neumann W-J, Reisert M, Si H, Oostenveld R, Rorden C, Yeh F-C, Fang Q, Herrington TM, Vorwerk J, Kühn AA (2019) Lead-DBS v2: towards a comprehensive pipeline for deep brain stimulation imaging. NeuroImage 184:293–316
Horn A, Reich MM, Ewert S, Li N, Al-Fatly B, Lange F, Roothans J, Oxenford S, Horn I, Paschen S, Runge J, Wodarg F, Witt K, Nickl RC, Wittstock M, Schneider G-H, Mahlknecht P, Poewe W, Eisner W, Kühn AA (2022) Optimal deep brain stimulation sites and networks for cervical vs. generalized dystonia. Proc Natl Acad Sci USA, 119(14), e2114985119
Hua K, Zhang J, Wakana S, Jiang H, Li X, Reich DS, Calabresi PA, Pekar JJ, van Zijl PCM, Mori S (2008) Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification. NeuroImage 39(1):336–347
Jbabdi S, Sotiropoulos SN, Haber SN, Van Essen DC, Behrens TE (2015) Measuring macroscopic brain connections in vivo. Nat Neurosci 18(11):1546–1555
Lancaster JL, Woldorff MG, Parsons LM, Liotti M, Freitas CS, Rainey L, Kochunov PV, Nickerson D, Mikiten SA, Fox PT (2000) Automated Talairach atlas labels for functional brain mapping. Hum Brain Mapp 10(3):120–131
PubMed PubMed Central CAS Google Scholar
Li Y, Zhang W, Wu Y, Yin L, Zhu C, Chen Y, Cetin-Karayumak S, Cho KIK, Zekelman LR, Rushmore J, Rathi Y, Makris N, O’Donnell LJ, Zhang F (2024) A diffusion MRI tractography atlas for concurrent white matter mapping across Eastern and Western populations. Sci Data 11(1):787
PubMed PubMed Central Google Scholar
Lv J, Calamante F (n.d.) The synergy of structural and functional connectivity. In Connectome Analysis. Elsevier, pp. 247–26.
Lv J, Zeng R, Ho MP, D’Souza A, Calamante F (2023) Building a tissue-unbiased brain template of fiber orientation distribution and tractography with multimodal registration. Magn Reson Med 89(3):1207–1220
Mazziotta J, Toga A, Evans A, Fox P, Lancaster J, Zilles K, Woods R, Paus T, Simpson G, Pike B, Holmes C, Collins L, Thompson P, MacDonald D, Iacoboni M, Schormann T, Amunts K, Palomero-Gallagher N, Geyer S, Mazoyer B (2001) A four-dimensional probabilistic atlas of the human brain. J Am Med Inf Association: JAMIA 8(5):401–430
Meola A, Yeh F-C, Fellows-Mayle W, Weed J, Fernandez-Miranda JC (2016) Human connectome-based tractographic atlas of the brainstem connections and surgical approaches. Neurosurgery 79(3):437–455
Mori S, Oishi K, Jiang H, Jiang L, Li X, Akhter K, Hua K, Faria AV, Mahmood A, Woods R, Toga AW, Pike GB, Neto PR, Evans A, Zhang J, Huang H, Miller MI, van Zijl P, Mazziotta J (2008) Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template. NeuroImage 40(2):570–582
Nowacki A, Barlatey S, Al-Fatly B, Dembek T, Bot M, Green AL, Kübler D, Lachenmayer ML, Debove I, Segura-Amil A, Horn A, Visser-Vandewalle V, Schuurman R, Barbe M, Aziz TZ, Kühn AA, Nguyen TAK, Pollo C (2022) Probabilistic mapping reveals optimal stimulation site in essential tremor. Ann Neurol 91(5):602–612
Nozais V, Forkel SJ, Foulon C, Petit L, de Thiebaut M (2021) Functionnectome as a framework to analyse the contribution of brain circuits to fMRI. Commun Biology 4(1):1035
O’Donnell LJ, Suter Y, Rigolo L, Kahali P, Zhang F, Norton I, Albi A, Olubiyi O, Meola A, Essayed WI, Unadkat P, Ciris PA, Wells WM 3rd, Rathi Y, Westin C-F, Golby AJ (2017) Automated white matter fiber tract identification in patients with brain tumors. NeuroImage Clin 13:138–153
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