Mobile genetic elements of global ST131 clades with carbapenemases

Tompkins K, van Duin D (2021) Treatment for carbapenem-resistant Enterobacterales infections: recent advances and future directions. Eur J Clin Microbiol Infect Dis 40(10):2053–2068

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pitout JD, Nordmann P, Poirel L (2015) Carbapenemase-Producing Klebsiella pneumoniae, a Key Pathogen Set for Global Nosocomial Dominance. Antimicrob Agents Chemother 59(10):5873–5884

Article  CAS  PubMed  PubMed Central  Google Scholar 

Karlowsky JA, Lob SH, Kazmierczak KM, Young K, Motyl MR, Sahm DF (2020) In vitro activity of imipenem/relebactam against Enterobacteriaceae and Pseudomonas aeruginosa isolated from intraabdominal and urinary tract infection samples: SMART Surveillance United States 2015-2017. J Glob Antimicrob Resist 21:223–228

Article  PubMed  Google Scholar 

Kazmierczak KM, Karlowsky JA, de Jonge BLM, Stone GG, Sahm DF (2021) Epidemiology of Carbapenem Resistance Determinants Identified in Meropenem-Nonsusceptible Enterobacterales Collected as Part of a Global Surveillance Program, 2012 to 2017. Antimicrob Agents Chemother 65(7):e0200020

Article  PubMed  Google Scholar 

Lee YL, Wang WY, Ko WC, Hsueh PR (2024) Global epidemiology and antimicrobial resistance of Enterobacterales harbouring genes encoding OXA-48-like carbapenemases: insights from the results of the Antimicrobial Testing Leadership and Surveillance (ATLAS) programme 2018-2021. J Antimicrob Chemother 79(7):1581–1589

Article  CAS  PubMed  Google Scholar 

Mathers AJ, Peirano G, Pitout JD (2015) The role of epidemic resistance plasmids and international high-risk clones in the spread of multidrug-resistant Enterobacteriaceae. Clin Microbiol Rev 28(3):565–591

Article  CAS  PubMed  PubMed Central  Google Scholar 

Peirano G, Pitout JDD (2019) Extended-Spectrum beta-Lactamase-Producing Enterobacteriaceae: Update on Molecular Epidemiology and Treatment Options. Drugs 79(14):1529–1541

Article  CAS  PubMed  Google Scholar 

Dahdouh E, Gomez-Marcos L, Canada-Garcia JE, de Arellano ER, Sanchez-Garcia A, Sanchez-Romero I, Lopez-Urrutia L, de la Iglesia P, Gonzalez-Praetorius A, Sotelo J, Valle-Millares D, Alonso-Gonzalez I, Bautista V, Lara N, Garcia-Cobos S, Cercenado E, Aracil B, Oteo-Iglesias J, Perez-Vazquez M, Spanish Eco-Carba Study G (2024) Characterizing carbapenemase-producing Escherichia coli isolates from Spain: high genetic heterogeneity and wide geographical spread. Front Cell Infect Microbiol 14:1390966

Article  CAS  PubMed  PubMed Central  Google Scholar 

Johnston BD, Thuras P, Porter SB, Anacker M, VonBank B, Vagnone PS, Witwer M, Castanheira M, Johnson JR (2021) Global molecular epidemiology of carbapenem-resistant Escherichia coli (2002-2017). Eur J Clin Microbiol Infect Dis. https://doi.org/10.1007/s10096-021-04310-6

Peirano G, Chen L, Nobrega D, Finn TJ, Kreiswirth BN, DeVinney R, Pitout JDD (2022) Genomic Epidemiology of Global Carbapenemase-Producing Escherichia coli, 2015-2017. Emerg Infect Dis 28(5):924–931

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pitout JD, DeVinney R (2017) Escherichia coli ST131: a multidrug-resistant clone primed for global domination. F1000Res 6:F1000 Faculty Rev-195. https://doi.org/10.12688/f1000research.10609.1

Pitout JDD, Peirano G, Chen L, DeVinney R, Matsumura Y (2022) Escherichia coli ST1193: Following in the Footsteps of E. coli ST131. Antimicrob Agents Chemother 66(7):e0051122

Article  PubMed  Google Scholar 

Matsumura Y, Pitout JD, Gomi R, Matsuda T, Noguchi T, Yamamoto M, Peirano G, DeVinney R, Bradford PA, Motyl MR, Tanaka M, Nagao M, Takakura S, Ichiyama S (2016) Global Escherichia coli Sequence Type 131 Clade with bla(CTX-M-27) Gene. Emerg Infect Dis 22(11):1900–1907

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pitout JD, Peirano G, DeVinney R (2023) The contributions of multidrug resistant clones to the success of pandemic extra-intestinal Pathogenic Escherichia coli. Expert Rev Anti-Infect Ther 21(4):343–353

Article  CAS  PubMed  Google Scholar 

Peirano G, Bradford PA, Kazmierczak KM, Badal RE, Hackel M, Hoban DJ, Pitout JD (2014a) Global incidence of carbapenemase-producing Escherichia coli ST131. Emerg Infect Dis 20(11):1928–1931

Article  CAS  PubMed  PubMed Central  Google Scholar 

Peirano G, Lynch T, Matsumara Y, Nobrega D, Finn TJ, DeVinney R, Pitout JDD (2020a) Trends in Population Dynamics of Escherichia coli Sequence Type 131, Calgary, Alberta, Canada, 2006-2016(1). Emerg Infect Dis 26(12):2907–2915

Article  CAS  PubMed  PubMed Central  Google Scholar 

Peirano G, Schreckenberger PC, Pitout JD (2011) Characteristics of NDM-1-producing Escherichia coli isolates that belong to the successful and virulent clone ST131. Antimicrob Agents Chemother 55(6):2986–2988

Article  CAS  PubMed  PubMed Central  Google Scholar 

Stoesser N, Sheppard AE, Peirano G, Anson LW, Pankhurst L, Sebra R, Phan HTT, Kasarskis A, Mathers AJ, Peto TEA, Bradford P, Motyl MR, Walker AS, Crook DW, Pitout JD (2017) Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli. Sci Rep 7(1):5917

Article  CAS  PubMed  PubMed Central  Google Scholar 

Stoesser N, Sheppard AE, Peirano G, Sebra R, Lynch T, Anson L, Kasarskis A, Motyl MR, Crook DW, Pitout JD (2016) Complete Sequencing of Plasmids Containing blaOXA-163 and blaOXA-48 in Escherichia coli Sequence Type 131. Antimicrob Agents Chemother 60(11):6948–6951

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bouras G, Houtak G, Wick RR, Mallawaarachchi V, Roach MJ, Papudeshi B, Judd LM, Sheppard AE, Edwards RA, Vreugde S (2024) Hybracter: enabling scalable, automated, complete and accurate bacterial genome assemblies. Microb Genom 10(5)

Kolmogorov M, Yuan J, Lin Y, Pevzner PA (2019) Assembly of long, error-prone reads using repeat graphs. Nat Biotechnol 37(5):540–546

Article  CAS  PubMed  Google Scholar 

Wick RR, Holt KE (2022) Polypolish: Short-read polishing of long-read bacterial genome assemblies. PLoS Comput Biol 18(1):e1009802

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen L, Peirano G, Kreiswirth BN, Devinney R, Pitout JDD (2022) Acquisition of genomic elements were pivotal for the success of Escherichia coli ST410. J Antimicrob Chemother 77(12):3399–3407

Article  CAS  PubMed  PubMed Central  Google Scholar 

Feldgarden M, Brover V, Gonzalez-Escalona N, Frye JG, Haendiges J, Haft DH, Hoffmann M, Pettengill JB, Prasad AB, Tillman GE, Tyson GH, Klimke W (2021) AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence. Sci Rep 11(1):12728

Article  CAS  PubMed  PubMed Central  Google Scholar 

Croucher NJ, Page AJ, Connor TR, Delaney AJ, Keane JA, Bentley SD, Parkhill J, Harris SR (2015) Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Res 43(3):e15

Article  PubMed  Google Scholar 

Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R (2020) IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Mol Biol Evol 37(5):1530–1534

Article  CAS  PubMed  PubMed Central  Google Scholar 

Carattoli A, Zankari E, Garcia-Fernandez A, Voldby Larsen M, Lund O, Villa L, Moller Aarestrup F, Hasman H (2014) In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing. Antimicrob Agents Chemother 58(7):3895–3903

Article  PubMed  PubMed Central  Google Scholar 

Robertson J, Bessonov K, Schonfeld J, Nash JHE (2020) Universal whole-sequence-based plasmid typing and its utility to prediction of host range and epidemiological surveillance. Microb Genom 6(10):mgen000435. https://doi.org/10.1099/mgen.0.000435

Article  PubMed  PubMed Central  Google Scholar 

Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J (2016) NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 44(14):6614–6624

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sullivan MJ, Petty NK, Beatson SA (2011) Easyfig: a genome comparison visualizer. Bioinformatics 27(7):1009–1010

Comments (0)

No login
gif