Milletomics: a metabolomics centered integrated omics approach toward genetic progression

Agarwal G, Kudapa H, Ramalingam A et al (2020) Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement. Funct Integr Genomics 20:739–761. https://doi.org/10.1007/s10142-020-00756-7

Article  PubMed  CAS  Google Scholar 

Agtuca BJ, Stopka SA, Tuleski TR et al (2020) In-Situ metabolomic analysis of Setaria viridis roots colonized by beneficial endophytic Bacteria. Mol Plant-Micro Interact 33:272–283. https://doi.org/10.1094/MPMI-06-19-0174-R

Article  CAS  Google Scholar 

Ahuja KG, Nath P, Swamy KRM (2010) Foods and Nutrition, 1st edn. Studium, New Delhi, India

Google Scholar 

Ajeesh Krishna TP, Maharajan T, Ceasar SA (2022) Improvement of millets in the post-genomic era. Physio Mol Bio Plants 28:669–685. https://doi.org/10.1007/s12298-022-01158-8

Article  CAS  Google Scholar 

Ambavane AR, Sawardekar SV, Sawantdesai SA, Gokhale NB (2015) Studies on mutagenic effectiveness and efficiency of gamma rays and its effect on quantitative traits in finger millet (Eleusine coracana L. Gaertn). J Radiat Res Appl Sci 8:120–125. https://doi.org/10.1016/j.jrras.2014.12.004

Article  Google Scholar 

Antony Ceasar S, Ignacimuthu S (2011) Agrobacterium-mediated transformation of finger millet (Eleusine coracana (L.) Gaertn.) Using shoot apex explants. Plant Cell Rep 30:1759–1770. https://doi.org/10.1007/s00299-011-1084-0

Article  PubMed  CAS  Google Scholar 

Ashraf MF, Hou D, Hussain Q et al (2022) Entailing the Next-Generation sequencing and metabolome for sustainable agriculture by improving Plant Tolerance. Int J Mol Sci 23:1–33. https://doi.org/10.3390/ijms23020651

Article  CAS  Google Scholar 

Babu BK, Dinesh P, Agrawal PK et al (2014) Comparative Genomics and Association Mapping Approaches for Blast Resistant Genes in Finger Millet using SSRs. PLoS ONE 9:1–12. https://doi.org/10.1371/journal.pone.0099182

Article  CAS  Google Scholar 

Baggett JP, Tillett RL, Cooper EA, Yerka MK (2021) De novo identification and targeted sequencing of SSRs efficiently fingerprints Sorghum bicolor sub-population identity. PLoS ONE 16:1–18. https://doi.org/10.1371/journal.pone.0248213

Article  CAS  Google Scholar 

Banerjee S (2012) Finger millet (Eleusine coracana) polyphenols: investigation of their antioxidant capacity and antimicrobial activity. Afric J Food Sci 6:362–374. https://doi.org/10.5897/ajfs12.031

Article  CAS  Google Scholar 

Banshidhar PS, Singh A et al (2023) The potentialities of omics resources for millet improvement. Funct Integr Genomics 23:210. https://doi.org/10.1007/s10142-023-01149-2

Article  PubMed  CAS  Google Scholar 

Bayer GYa, Yemets AI, Blume YB (2014) Obtaining the transgenic lines of finger millet Eleusine coracana (L.). With dinitroaniline resistance. Cytol Genet 48:139–144. https://doi.org/10.3103/S0095452714030025

Article  Google Scholar 

Bekkering CS, Tian L (2019) Thinking outside of the cereal box: breeding underutilized (Pseudo)Cereals for Improved Human Nutrition. Front Genet 10:1–7. https://doi.org/10.3389/fgene.2019.01289

Article  CAS  Google Scholar 

Bellato S, Ciccoritti R, Del Frate V et al (2013) Influence of genotype and environment on the content of 5-n alkylresorcinols, total phenols and on the antiradical activity of whole durum wheat grains. J Cereal Sci 57:162–169. https://doi.org/10.1016/j.jcs.2012.11.003

Article  CAS  Google Scholar 

Bennetzen JL, Schmutz J, Wang H et al (2012) Reference genome sequence of the model plant Setaria. Nat Biotechnol 30:555–561. https://doi.org/10.1038/nbt.2196

Article  PubMed  CAS  Google Scholar 

Bhave KG, Dalvi VV, Thaware BL et al (2016) Mutagenesis in proso millet (Panicum miliaceum L). Int J Chem Stud 5:1635–1638

Google Scholar 

Bidinger FR, Serraj R, Rizvi SMH et al (2005) Field evaluation of drought tolerance QTL effects on phenotype and adaptation in pearl millet [Pennisetum glaucum (L.) R. Br.] Topcross hybrids. Field Crops Res 94:14–32. https://doi.org/10.1016/j.fcr.2004.11.006

Article  Google Scholar 

Boutrot F, Zipfel C (2017) Function, Discovery, and Exploitation of Plant Pattern Recognition receptors for Broad-Spectrum Disease Resistance. Annu Rev Phytopathol 55:257–286. https://doi.org/10.1146/annurev-phyto-080614-120106

Article  PubMed  CAS  Google Scholar 

Burton GW, Powell J (1966) Morphological and cytological response of Pear Millet, Pennisetum typhoides to Thermal Neutron and Ethyl Methane Sulfonate seed treatments. Crop Sci 6:180–182. https://doi.org/10.2135/cropsci1966.0011183X000600020021x

Article  CAS  Google Scholar 

Burton GW, PowellResearch Geneticist JB, HannaResearch Geneticist WW (1974) Effect of recurrent mutagen seed treatments on mutation frequency and combining ability for forage yield in pearl millet (Pennisetum americanum (L.) K. Schum). Radiation Bot 14:323–335. https://doi.org/10.1016/S0033-7560(74)80024-4

Article  Google Scholar 

Cannarozzi G, Plaza-Wüthrich S, Esfeld K et al (2014) Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef). BMC Genomics 15:581. https://doi.org/10.1186/1471-2164-15-581

Article  PubMed  PubMed Central  Google Scholar 

Cao X, Hu Y, Song J et al (2022) Transcriptome Sequencing and Metabolome Analysis reveals the molecular mechanism of Drought stress in Millet. Int J Mol Sci 23:10792. https://doi.org/10.3390/ijms231810792

Article  PubMed  PubMed Central  CAS  Google Scholar 

Ceasar A (2022) Genome-editing in millets: current knowledge and future perspectives. Mol Biol Rep 49:773–781. https://doi.org/10.1007/s11033-021-06975-w

Article  PubMed  CAS  Google Scholar 

Chakrabarti S, Jahandideh F, Davidge ST, Wu J (2018) Milk-derived tripeptides IPP (Ile-Pro-Pro) and VPP (Val-Pro-Pro) enhance insulin sensitivity and prevent insulin resistance in 3T3-F442A preadipocytes. J Agric Food Chem 66:10179–10187. https://doi.org/10.1021/acs.jafc.8b02051

Article  PubMed  CAS  Google Scholar 

Chandrasekara A, Shahidi F (2010) Content of insoluble bound phenolics in millets and their contribution to antioxidant capacity. J Agric Food Chem 58:6706–6714. https://doi.org/10.1021/jf100868b

Article  PubMed  CAS  Google Scholar 

Chandrasekara A, Shahidi F (2011) Determination of antioxidant activity in free and hydrolyzed fractions of millet grains and characterization of their phenolic profiles by HPLC-DAD-ESI-MSn. J Funct Foods 3:144–158. https://doi.org/10.1016/j.jff.2011.03.007

Article  CAS  Google Scholar 

Chanwala J, Satpati S, Dixit A et al (2020) Genome-wide identification and expression analysis of WRKY transcription factors in pearl millet (Pennisetum glaucum) under dehydration and salinity stress. BMC Genomics 21:231. https://doi.org/10.1186/s12864-020-6622-0

Article  PubMed  PubMed Central  CAS  Google Scholar 

Cheng Z, Sun Y, Yang S et al (2021) Establishing in planta haploid inducer line by edited SiMTL in foxtail millet (Setaria italica). Plant Biotechnol J 19:1089–1091. https://doi.org/10.1111/pbi.13584

Article  PubMed  PubMed Central  Google Scholar 

CHETHAN S, MALLESHI N (2007) Finger millet polyphenols: optimization of extraction and the effect of pH on their stability. Food Chem 105:862–870. https://doi.org/10.1016/j.foodchem.2007.02.012

Article  CAS  Google Scholar 

Das IK, Rakshit S (2016) Millets, their importance, and production constraints. Biotic Stress Resistance in millets. Elsevier, pp 3–19

de Dal’Molin O, Orellana CG, Gebbie C L, et al (2016) Metabolic Reconstruction of Setaria italica: A systems Biology Approach for integrating tissue-specific omics and Pathway Analysis of Bioenergy Grasses. Front Plant Sci 7:1–20. https://doi.org/10.3389/fpls.2016.01138

Article  Google Scholar 

de Souza LP, Borghi M, Fernie A (2020) Plant single-cell Metabolomics—challenges and perspectives. Int J Mol Sci 21:1–17. https://doi.org/10.3390/ijms21238987

Article  CAS  Google Scholar 

Dudhate A, Shinde H, Tsugama D et al (2018) Transcriptomic analysis reveals the differentially expressed genes and pathways involved in drought tolerance in pearl millet [Pennisetum glaucum (L.) R. Br]. PLoS ONE 13:1–14. https://doi.org/10.1371/journal.pone.0195908

Article 

Comments (0)

No login
gif