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Direction and modality of transcription changes caused by TAD boundary disruption in Slc29a3/Unc5b locus depends on tissue-specific epigenetic context
Direction and modality of transcription changes caused by TAD boundary disruption in Slc29a3/Unc5b locus depends on tissue-specific epigenetic context
Topologically associating domains (TADs) are believed to play a role in the regulation of gene expression by constraining ...
The epigenetic circle: feedback loops in the maintenance of cellular memory
The epigenetic circle: feedback loops in the maintenance of cellular memory
The memory of gene expression states, active or repressive, is a fundamental biological concept as it controls cell fate i...
The isoflavone genistein selectively stimulates major satellite repeat transcription in mouse heterochromatin
The isoflavone genistein selectively stimulates major satellite repeat transcription in mouse heterochromatin
Mouse heterochromatin is characterized by A/T-rich, 234 bp DNA repeat arrays, called major satellite repeats (MSR...
Comparison of current methods for genome-wide DNA methylation profiling
Comparison of current methods for genome-wide DNA methylation profiling
DNA methylation is an epigenetic mechanism involved in gene regulation and cellular differentiation. Accurate and comprehe...
Structural DNMT-nucleosome contacts are related to DNA methylation patterns
Structural DNMT-nucleosome contacts are related to DNA methylation patterns
DNA-methylation is a key epigenetic mark in chromatin that attenuates chromatin accessibility during transcription, implyi...
Crosstalk between non-coding RNAs and programmed cell death in colorectal cancer: implications for targeted therapy
Crosstalk between non-coding RNAs and programmed cell death in colorectal cancer: implications for targeted therapy
Colorectal cancer (CRC) remains one of the most common causes of cancer-related mortality worldwide. Its progression is in...
Acquired sperm hypomethylation by gestational arsenic exposure is re-established in both the paternal and maternal genomes of post-epigenetic reprogramming embryos
Acquired sperm hypomethylation by gestational arsenic exposure is re-established in both the paternal and maternal genomes of post-epigenetic reprogramming embryos
DNA methylation plays a crucial role in mammalian development. While methylome changes acquired in the parental genomes ar...
Tissue-specific roles of de novo DNA methyltransferases
Tissue-specific roles of de novo DNA methyltransferases
DNA methylation, catalyzed by DNA methyltransferases (DNMT), plays pivotal role in regulating embryonic development, gene ...
Comprehensive analysis of H3K27me3 LOCKs under different DNA methylation contexts reveal epigenetic redistribution in tumorigenesis
Comprehensive analysis of H3K27me3 LOCKs under different DNA methylation contexts reveal epigenetic redistribution in tumorigenesis
Histone modification H3K27me3 plays a critical role in normal development and is associated with various diseases, includi...
Assessment of relationships between epigenetic age acceleration and multiple sclerosis: a bidirectional mendelian randomization study
Assessment of relationships between epigenetic age acceleration and multiple sclerosis: a bidirectional mendelian randomization study
The DNA methylation-based epigenetic clocks are increasingly recognized for their precision in predicting aging and its he...
Transcriptional regulation mechanism of PARP1 and its application in disease treatment
Transcriptional regulation mechanism of PARP1 and its application in disease treatment
Poly (ADP-ribose) polymerase 1 (PARP1) is a multifunctional nuclear enzyme that catalyzes poly-ADP ribosylation in eukaryo...
The role of hexokinases in epigenetic regulation: altered hexokinase expression and chromatin stability in yeast
The role of hexokinases in epigenetic regulation: altered hexokinase expression and chromatin stability in yeast
Human hexokinase 2 (HK2) plays an important role in regulating Warburg effect, which metabolizes glucose to lactate acid e...
Transcriptional silencing in Saccharomyces cerevisiae: known unknowns
Transcriptional silencing in Saccharomyces cerevisiae: known unknowns
Transcriptional silencing in Saccharomyces cerevisiae is a persistent and highly stable form of gene repression. It involv...
PRKACB is a novel imprinted gene in marsupials
PRKACB is a novel imprinted gene in marsupials
Genomic imprinting results in parent-of-origin-specific gene expression and, among vertebrates, is found only in therian m...
Methylation patterns at the adjacent CpG sites within enhancers are a part of cell identity
Methylation patterns at the adjacent CpG sites within enhancers are a part of cell identity
It is generally accepted that methylation status of CpG sites spaced up to 50 bp apart is correlated, and accumul...
Imprinted DNA methylation of the H19 ICR is established and maintained in vivo in the absence of Kaiso
Imprinted DNA methylation of the H19 ICR is established and maintained in vivo in the absence of Kaiso
Paternal allele-specific DNA methylation of the imprinting control region (H19 ICR) controls genomic imprinting at the Igf...
Folate deficiency reduced aberrant level of DOT1L-mediated histone H3K79 methylation causes disruptive SHH gene expression involved in neural tube defects
Folate deficiency reduced aberrant level of DOT1L-mediated histone H3K79 methylation causes disruptive SHH gene expression involved in neural tube defects
Neural tube defects (NTDs) are one of the most severe congenital abnormalities characterized by failures of the neural tub...
O-GlcNAcylation: the sweet side of epigenetics
O-GlcNAcylation: the sweet side of epigenetics
Histones display a wide variety of post-translational modifications, including acetylation, methylation, and phosphorylati...
Chromatin accessibility and cell cycle progression are controlled by the HDAC-associated Sin3B protein in murine hematopoietic stem cells
Chromatin accessibility and cell cycle progression are controlled by the HDAC-associated Sin3B protein in murine hematopoietic stem cells
Blood homeostasis requires the daily production of millions of terminally differentiated effector cells that all originate...
A low-input high resolution sequential chromatin immunoprecipitation method captures genome-wide dynamics of bivalent chromatin
A low-input high resolution sequential chromatin immunoprecipitation method captures genome-wide dynamics of bivalent chromatin
Bivalent chromatin is an exemplar of epigenetic plasticity. This co-occurrence of active-associated H3K4me3 and inactive-a...
The functions of SET domain bifurcated histone lysine methyltransferase 1 (SETDB1) in biological process and disease
The functions of SET domain bifurcated histone lysine methyltransferase 1 (SETDB1) in biological process and disease
Histone methyltransferase SETDB1 (SET domain bifurcated histone lysine methyltransferase 1, also known as ESET or KMT1E) i...
Chromatin balances cell redox and energy homeostasis
Chromatin balances cell redox and energy homeostasis
Chromatin plays a central role in the conversion of energy in cells: alteration of chromatin structure to make DNA accessi...
Expression analysis suggests that DNMT3L is required for oocyte de novo DNA methylation only in Muridae and Cricetidae rodents
Expression analysis suggests that DNMT3L is required for oocyte de novo DNA methylation only in Muridae and Cricetidae rodents
During early mammalian development, DNA methylation undergoes two waves of reprogramming, enabling transitions between som...
Estimating genome-wide DNA methylation heterogeneity with methylation patterns
Estimating genome-wide DNA methylation heterogeneity with methylation patterns
In a heterogeneous population of cells, individual cells can behave differently and respond variably to the environment. T...
Differential usage of DNA modifications in neurons, astrocytes, and microglia
Differential usage of DNA modifications in neurons, astrocytes, and microglia
Cellular identity is determined partly by cell type-specific epigenomic profiles that regulate gene expression. In neurosc...
EphrinA5 regulates cell motility by modulating Snhg15/DNA triplex-dependent targeting of DNMT1 to the Ncam1 promoter
EphrinA5 regulates cell motility by modulating Snhg15/DNA triplex-dependent targeting of DNMT1 to the Ncam1 promoter
Cell–cell communication is mediated by membrane receptors and their ligands, such as the Eph/ephrin system, orchestr...
Development of super-specific epigenome editing by targeted allele-specific DNA methylation
Development of super-specific epigenome editing by targeted allele-specific DNA methylation
Epigenome editing refers to the targeted reprogramming of genomic loci using an EpiEditor which may consist of an sgRNA/dC...
Analyses of POL30 (PCNA) reveal positional effects in transient repression or bi-modal active/silent state at the sub-telomeres of S. cerevisiae
Analyses of POL30 (PCNA) reveal positional effects in transient repression or bi-modal active/silent state at the sub-telomeres of S. cerevisiae
Classical studies on position effect variegation in Drosophila have demonstrated the existence of bi-modal Active/Silent s...
Vitamin C activates young LINE-1 elements in mouse embryonic stem cells via H3K9me3 demethylation
Vitamin C activates young LINE-1 elements in mouse embryonic stem cells via H3K9me3 demethylation
Vitamin C (vitC) enhances the activity of 2-oxoglutarate-dependent dioxygenases, including TET enzymes, which catalyse DNA...
The application of epiphenotyping approaches to DNA methylation array studies of the human placenta
The application of epiphenotyping approaches to DNA methylation array studies of the human placenta
Genome-wide DNA methylation (DNAme) profiling of the placenta with Illumina Infinium Methylation bead arrays is often used...
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